Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120904.seq
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 28   5.7  
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 27   9.9  
SB_4152| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 450 YLEINKLRLKIDEPMQLGDMPQ--IFPLLCDEHQNVAVEHRRVDK 578
           +LE  + R+K+DE  +     Q    P   +EH+ V + H+ VDK
Sbjct: 491 FLETTQNRVKLDEDTESNAQYQDETGPPAHEEHEGVVLRHKAVDK 535


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 152 NGGRRHVANHQHHGLSNGRVVVN 220
           N G+R+V + QH G +N RV+++
Sbjct: 597 NEGQRYVISGQHSGTTNKRVIID 619


>SB_4152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 116 QQTAGKPFGANANGGRRH 169
           +Q+ G+P G + NGGR H
Sbjct: 8   EQSTGRPVGGSVNGGRLH 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,239,371
Number of Sequences: 59808
Number of extensions: 386916
Number of successful extensions: 990
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)