Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120904.seq
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    28   4.9  
AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related...    28   6.5  
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related...    28   6.5  

>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = -1

Query: 399 ITWIVLS*TLPKKS----NTLTVSILFNLILVSLACIGSNRLRAPTD*VDKILNFQFYW 235
           + +++LS  L K++      L +++ +N + ++ +C+ SN  +  +D ++K +N   YW
Sbjct: 453 VDFVILSTVLQKQNLPPDEQLALTLSWNRVDLAKSCLFSNGRKWSSDVLEKAMNDALYW 511


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 469 NLFISKYNAIA-LIVTDDAHLLCNYHLDRVVVNAPQKV*HVDRFDSIQLNFGLVGL 305
           +LF++ + +    +V + A  LC  H  R V  +P K     +F   +  FG VGL
Sbjct: 309 SLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGDVGL 364


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = -1

Query: 399 ITWIVLS*TLPKKS----NTLTVSILFNLILVSLACIGSNRLRAPTD*VDKILNFQFYW 235
           + +++LS  L K++      L +++ +N + ++ +C+ SN  +  +D ++K +N   YW
Sbjct: 169 VDFVILSTVLQKQNLPPDEQLALTLSWNRVDLAKSCLFSNGRKWSSDVLEKAMNDALYW 227


>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = -3

Query: 625 YLKLCFAICEPRAL*NLSTRRCSTATF*CSSQSKGNIWGISPNCIGSSIFN 473
           +LKL FAI     L  +S  RC    F    + K   W      I + IFN
Sbjct: 138 FLKLHFAISASNILFVISIERCCACYFLNDYEKKSRTWIAVTLVISAQIFN 188


>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
           helicase protein.
          Length = 1037

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 510 PQIFPLLCDEHQNVAVEHRRVDKFY 584
           PQ+   LC+EH+N   +  R+D+F+
Sbjct: 396 PQMIVNLCNEHRNSLDDESRLDQFF 420


>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
           helicase protein 1 protein.
          Length = 1037

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 510 PQIFPLLCDEHQNVAVEHRRVDKFY 584
           PQ+   LC+EH+N   +  R+D+F+
Sbjct: 396 PQMIVNLCNEHRNSLDDESRLDQFF 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,715
Number of Sequences: 27780
Number of extensions: 290469
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)