Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120904.seq
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.47 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 74  GHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLS 199
           GHWQ        PP+QT   P     +G RR     +++ +S
Sbjct: 383 GHWQMSCVACSPPPRQT---PPSRKESGRRRRRRTPRYNSVS 421


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 352 VDRFDSIQLNFGLVGLHRFQQIARSDRLSRQN 257
           +DR D++     +  + R  +I R DR+ R N
Sbjct: 498 MDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTN 529


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 INTTASQTAASLLINDITPNKTESL 254
           IN   SQT   LLI++I P+ + +L
Sbjct: 271 INILLSQTMFFLLISEIIPSTSLAL 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,931
Number of Sequences: 438
Number of extensions: 3526
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)