Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120903.seq
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0977 - 12842948-12843572,12844326-12844741                       30   1.4  
03_05_1008 - 29644352-29645297,29645381-29645769                       29   3.2  

>03_02_0977 - 12842948-12843572,12844326-12844741
          Length = 346

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 32  GGVTKTILAGQLACSAGNHAVVSTLLIRHAR 124
           G  TK ++AG LA  +G  AVV  LL  H R
Sbjct: 209 GYATKRLVAGLLAVESGQDAVVRGLLFEHRR 239


>03_05_1008 - 29644352-29645297,29645381-29645769
          Length = 444

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 40  YKNHPGRSTRLQRWKSRSCLYTADPS-RTVTGSMNNL 147
           Y+N PG  TR+  + S S L   DP+ + +TG MN L
Sbjct: 103 YRNAPGVETRVSDFGSTSTLRYLDPNLKLLTGYMNVL 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,623,266
Number of Sequences: 37544
Number of extensions: 349330
Number of successful extensions: 824
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)