Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120903.seq
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)                 29   2.4  
SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_13407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_16335| Best HMM Match : Fels1 (HMM E-Value=9.9)                     27   9.9  
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
          Length = 778

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 632 SLVYSKLSNTSMSVVLQLISVQHHNGPNNRHC-NTSHLQLH 513
           S +  K  NTS  +     +V H+NGPN     NT HL  H
Sbjct: 310 SKILKKFLNTSHIMEHNNTNVSHYNGPNQTMTYNTRHLMSH 350


>SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 18  FSKALVALQKPSWQVNSLAALEIT-QLSLHC*SVTHGNRFNEQSTPRLC*NVKFNGGA 188
           F+K    ++     +N L AL I    S    S   G R N QSTP++    K +GG+
Sbjct: 6   FTKPTTKVEPKHLYMNKLIALTIILSTSFFTFSQVLGGRENSQSTPKVAEATKLSGGS 63


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 602 SMSVVLQLISVQHHNGPNNRHCNTSHLQLHCIFQICIINVFHVPLFER 459
           S+ +++ +  + HH+     + ++S L   CI  I I N+ +  LF R
Sbjct: 312 SLCIIIIITVIMHHHHHYRHYASSSTLPSLCIIIIIITNIPYYLLFSR 359


>SB_13407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 524 GAMCCNGDCLGRCGVGPKSAAKPRTW 601
           G   CNGD L RC    K  A P  W
Sbjct: 30  GTQTCNGDVLIRCSHKVKFLALPELW 55


>SB_16335| Best HMM Match : Fels1 (HMM E-Value=9.9)
          Length = 301

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -1

Query: 381 PGLFFAQPGILCVT----PHSSHSIKTIMLNFWQXXXXXXXXXIVYSTRLNLFKILFCKM 214
           PG+   QP  + VT    P     I++IML  W           +YS  +  F++ F K+
Sbjct: 152 PGVRCLQPPAVGVTQRSLPECPIDIESIMLTKWLHYLNSVLNPFIYSFMIKDFRMAFRKL 211

Query: 213 HTCALTS 193
              A+TS
Sbjct: 212 VIHAVTS 218


>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 4    HEPVRLAKRWWRYKNHP 54
            HEP R  +RWWR    P
Sbjct: 965  HEPARRLRRWWRGSRAP 981


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,016,872
Number of Sequences: 59808
Number of extensions: 440210
Number of successful extensions: 1156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)