Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120903.seq
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    31   0.53 
Z77670-3|CAE17973.1|  201|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   1.2  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   1.2  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    30   1.6  
AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z50045-1|CAA90362.1|  174|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    29   3.7  
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 381 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 500
           GL+   S   IFN   L A++LL+ N +K    K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>Z77670-3|CAE17973.1|  201|Caenorhabditis elegans Hypothetical
           protein W05E10.5 protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/75 (26%), Positives = 38/75 (50%)
 Frame = -2

Query: 614 LSNTSMSVVLQLISVQHHNGPNNRHCNTSHLQLHCIFQICIINVFHVPLFERVRNKQYIS 435
           + +TS S+ +  ++  +   PN  HC + +L+     +I  +N F   L E   +++++ 
Sbjct: 11  VQSTSTSITMTAVTSNNSQDPNGGHCASPYLRR---IRIPKLNTFRHHLEEDEDDEEWLE 67

Query: 434 RQMHNVKNKLGRRRV 390
            QM   KN L R R+
Sbjct: 68  MQM--AKNDLIRLRM 80


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 172 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 41
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 172 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 41
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 581 LISVQ--HHNGPNNRHCNTSHLQLHCIFQICIINVFHVPLFERVRNKQYI 438
           LIS++  + N  NN H NT   +   +FQ  +I++F+V  +       YI
Sbjct: 196 LISIRRANKNVVNNIHSNTKKQEARYLFQFVVISIFYVATWISFETLPYI 245


>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 6   RACAFSKALVALQKPSWQVNSLAALEITQ 92
           +A    KAL +L+K SWQV+SL  L   Q
Sbjct: 195 QAHRLEKALASLEKVSWQVSSLLGLPAIQ 223


>Z50045-1|CAA90362.1|  174|Caenorhabditis elegans Hypothetical
           protein F38B2.2 protein.
          Length = 174

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 518 IEGAMCCN-GDCLGRCGVGPKS 580
           ++ + CC+ G CL RCG+ PK+
Sbjct: 80  LQDSFCCSEGPCLTRCGIYPKT 101


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 175 NFTFQHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATNALL 20
           ++  +H +G D       C    +C  D C+         C D  CN++N L+
Sbjct: 60  SYVRRHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSNGLI 112


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 354 CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNTV*LKVR 530
           C   + INL  +N    +F IF I+H  +NVLLV  +     +  I++   +N +   V 
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLVFYSASTFFIYLIFSEKYRNVLSTCVT 319

Query: 531 C 533
           C
Sbjct: 320 C 320


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 320 IECEECGVTHKMPGCAKNKPGSI*LGVGRVY 412
           I+C +CG   K+P  AKN    + + V  +Y
Sbjct: 21  IKCHQCGGAEKIPKFAKNALAKLNISVDSLY 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,675
Number of Sequences: 27780
Number of extensions: 327340
Number of successful extensions: 842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)