Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120903.seq
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.83 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.83 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.83 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   7.7  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 479 HVPLFERVRNKQYI 438
           HVP+F+R  N++YI
Sbjct: 365 HVPIFDRYINREYI 378


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 479 HVPLFERVRNKQYI 438
           HVP+F+R  N++YI
Sbjct: 365 HVPIFDRYINREYI 378


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 479 HVPLFERVRNKQYI 438
           HVP+F+R  N++YI
Sbjct: 365 HVPIFDRYINREYI 378


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 594  RGFAADFG-PTPQRPKQSPLQHIAPS 520
            RG +A  G P P+RP++ P   ++PS
Sbjct: 1355 RGPSASGGRPVPERPERVPTVDLSPS 1380


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 610 PTLPCPWFC 584
           P  PCPW C
Sbjct: 231 PVKPCPWIC 239


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 140 TIYASIVLKRKI*RWRFQLVNAHVCILQNKI 232
           T+   + LKR   +  FQ +N+ VC L +K+
Sbjct: 380 TLSTKLTLKRHKEQQHFQPLNSAVCALCHKV 410


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 552  KQSPLQHIAPSITLYFSNM 496
            +QSP QH+ P  TL  S +
Sbjct: 1007 QQSPQQHVLPGKTLLASQI 1025


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 378 GLFFAQPGILCVTPHSSHSI 319
           GL     G++CV   S HSI
Sbjct: 67  GLKLLSDGLMCVEKDSIHSI 86


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 530 SHLQLHCIFQI 498
           SHL+ HC F I
Sbjct: 241 SHLEAHCYFDI 251


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 391 LYRPRFIFCATRHFVRH 341
           +YRP  +   T+ F+RH
Sbjct: 6   VYRPTIVKKRTKKFIRH 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,691
Number of Sequences: 438
Number of extensions: 4250
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)