Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120903.seq
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55010.1 68414.m06283 plant defensin-fusion protein, putative...    31   0.87 
At5g48430.1 68418.m05988 expressed protein low similarity to ext...    28   6.1  
At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051...    27   8.1  

>At1g55010.1 68414.m06283 plant defensin-fusion protein, putative
           (PDF1.5) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); similar to antifungal
           protein 4 [Raphanus sativus] gi|1655683|emb|CAA65983
          Length = 80

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 121 CVTDQQCRDNCVISSAASELTCQDGF 44
           CV D QCRD+C+ +   ++  C  G+
Sbjct: 43  CVNDYQCRDHCINNDRGNDGYCAGGY 68


>At5g48430.1 68418.m05988 expressed protein low similarity to
           extracellular dermal glycoprotein EDGP precursor [Daucus
           carota] GI:285741, SP|P13917 Basic 7S globulin precursor
           {Glycine max}; expression supported by MPSS
          Length = 406

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 546 SPLQHIAPSITLYFSNMYYKCISRP 472
           S L+ I+PS+T+  +N+YY CI +P
Sbjct: 131 SSLKPISPSVTI--NNVYYLCIPQP 153


>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
           TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
           [Synechococcus sp. PCC 7002]
          Length = 366

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 548 CLGRCGVGPKSAAKPR 595
           CLGRCG GP   A P+
Sbjct: 186 CLGRCGSGPNLVALPQ 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,707
Number of Sequences: 28952
Number of extensions: 279925
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)