Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120902.seq
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   5.3  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   7.1  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   9.3  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 547 FLDLFIAVYNFGDVRTLLHLTRFIFIHLSTTFAFEACS 434
           F  L++++    D+R    LT  IFI   T + F  CS
Sbjct: 245 FAYLYLSLVRLHDIRAKFGLTATIFIQSGTAY-FSTCS 281


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +2

Query: 473 KNETCQMQQSSNVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLGAQQIH 640
           KN+  Q   +  V+ I ++ E +       +FD   + S E  +T+K++     +H
Sbjct: 300 KNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQETPVH 355


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 503 SNVTEIVNSDEKIQKTYELAEFDLKNLSSLESY 601
           S   E  +  E IQK YE+ E +   + S E++
Sbjct: 726 SKEQEASSQQENIQKAYEIIEKEFPTIGSAENH 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,611
Number of Sequences: 5004
Number of extensions: 39257
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)