Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120902.seq
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388...    28   5.5  
01_06_0687 - 31249036-31249341                                         27   9.7  

>04_04_0224 -
           23738105-23738273,23738364-23738472,23738702-23738804,
           23738895-23738926,23739342-23739592,23739639-23739754,
           23740271-23740526,23740760-23740847,23740985-23741062,
           23741238-23741313,23741532-23741590,23742639-23742711
          Length = 469

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 97  LNREGISTQTNFRNHLLLKDMQ 32
           +NREGIS   N  N LLLK +Q
Sbjct: 77  INREGISYYNNLINELLLKGVQ 98


>01_06_0687 - 31249036-31249341
          Length = 101

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 582 RFFKSNSANS*VFWIFSSLFTISVTFELCC 493
           R  K ++ +S V W    L TI+   ELCC
Sbjct: 36  RMTKPSATSSGVAWTMEDLLTIATGDELCC 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,289,030
Number of Sequences: 37544
Number of extensions: 212061
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)