Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120902.seq
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067617-2|AAC17558.3|  377|Caenorhabditis elegans Uncoordinated...    28   4.9  
AF067617-1|ABQ13063.1|  379|Caenorhabditis elegans Uncoordinated...    28   4.9  
AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical...    27   8.6  

>AF067617-2|AAC17558.3|  377|Caenorhabditis elegans Uncoordinated
           protein 57, isoform a protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 485 CQMQQSSNVTEIVNSDEKIQKTYELAEFDLKNLSS--LESYETLKIKLGAQ 631
           C+ +Q     E++ ++EK++++  LAE  + N+ S  +E    L+  + AQ
Sbjct: 170 CKKRQQRRDDEMIQAEEKLEESKRLAEMSMFNVLSNDVEQISQLRALIEAQ 220


>AF067617-1|ABQ13063.1|  379|Caenorhabditis elegans Uncoordinated
           protein 57, isoform c protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 485 CQMQQSSNVTEIVNSDEKIQKTYELAEFDLKNLSS--LESYETLKIKLGAQ 631
           C+ +Q     E++ ++EK++++  LAE  + N+ S  +E    L+  + AQ
Sbjct: 170 CKKRQQRRDDEMIQAEEKLEESKRLAEMSMFNVLSNDVEQISQLRALIEAQ 220


>AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical
           protein T15B7.14 protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 541 DLFIAVYNFGDVRTLLHLTRFIFIHLSTTFAFEACS 434
           DL IA Y    ++++L L  F+FI L++ +AF+  S
Sbjct: 121 DLLIAPYRGFYLKSVLMLFYFLFIALTSYYAFDTFS 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,239,619
Number of Sequences: 27780
Number of extensions: 214313
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)