Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120902.seq
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    28   6.1  
At1g26510.1 68414.m03231 F-box family protein contains F-box dom...    27   8.1  

>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
           subunit (RPB205) (RPII) (RPB1) nearly identical to
           P|P18616 DNA-directed RNA polymerase II largest subunit
           (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 562 GQFVGFLDLFIAVYNFGDVRTLLHLTRFIFIHLSTTFAFEAC 437
           G F G+L+L   +Y+ G ++T+L + R +  + S   A E C
Sbjct: 78  GHF-GYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVC 118


>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 686

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 470 YKNETCQMQQSSNVTEIVNSDEKIQKTYELAEFDLKNLS-SLESYETLKIK 619
           + N+   M+  S  T+ VN++  +QK+ E  +FD   L   +E +  L +K
Sbjct: 330 HSNQRLIMRTRSKKTKTVNNNNDLQKSEEKQKFDQLPLDLEIEMFRRLPLK 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,316,590
Number of Sequences: 28952
Number of extensions: 191016
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)