Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120900.seq
         (576 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.46 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   3.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 17/74 (22%), Positives = 30/74 (40%)
 Frame = -3

Query: 265 QKYRKMFFTLCMLSVLLA*FSKLLFMETXHLLNSVKKVRPLPSTIKLWLKYFENKKHNES 86
           Q+  +  FT   L +L   F+K  + +         K+    S +++W K    K   + 
Sbjct: 127 QRRERTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQVWFKNRRAKCRQQL 186

Query: 85  ISSRNNCASKHTFS 44
              +N  AS+ T S
Sbjct: 187 QQQQNKSASRTTTS 200


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 316 VLHNGPKLGHLFDELVAQKYRKMFFTLCMLSVL 218
           + H    +  +   +++ K+R  FF LC + ++
Sbjct: 341 MFHINSAVNPILYNIISSKFRSGFFKLCGMKIV 373


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 541 WKSXRSNTYNMRXHAKHGS*KN 476
           W++ + +T N R H  +G+  N
Sbjct: 364 WRNNQPSTSNNRWHNNNGNNSN 385


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,016
Number of Sequences: 336
Number of extensions: 2549
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)