Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120900.seq
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    30   0.21 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.1  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    27   1.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   2.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   6.0  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   7.9  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.9  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 84  IDSLCFLFSKYFNQSLIVDGKGLTFFTEF 170
           I+SLC LF+K+ N   + + + +TF T+F
Sbjct: 698 INSLCKLFTKFSNFDYLFEDRTVTFLTDF 726


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 78  DEID--SLCFLFSKYFNQSLIVDGKGLTF 158
           DEID  SLC L  K+F  +  V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 51  VCFE-AQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCXVSIKSSFENQANNTD 227
           V FE  Q L DE+  + FL +     ++ VD    T   E  K  +  ++ F NQANN D
Sbjct: 132 VSFEQGQALADEL-GVKFLEASA-KTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 286 LFDELVAQKYRKMFFTLCMLSVLLA*FSKLLFMETXH 176
           LF++L+A+K R +  T+  L +LL    + L + T H
Sbjct: 554 LFEDLMAEKSRGLSSTVWSLQLLLCYLEQCLRLNTLH 590


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -3

Query: 286 LFDELVAQKYRKMFFTLCMLSVLLA*FSKLLFMETXHLLNSVKKVRPLPSTIKLWLKYFE 107
           L D     KY   +    +L V +A  SK  F++   + N+V  V PLP  I L ++Y +
Sbjct: 309 LDDSAFGDKYPIRYLVELLLFVSVALQSK--FVQNLFVSNTVP-VPPLPPCIPLLVQYTQ 365

Query: 106 NKKH 95
             KH
Sbjct: 366 LPKH 369


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 365 MCXXCKPANKIQCFECKC-RYXAXSLSTLDEGXQNGWXIF 481
           +C      +K QC+ C+C R  +   ++L     + W IF
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQSSDTWSIF 446


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 51  VCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCXVSIKSSFENQANNTDN 230
           + F     R  ++SLCFLF    NQ    D   L  F   N+  +++       + +T+N
Sbjct: 341 ITFMGDFKRCVVESLCFLFLLLTNQPRFTD--ELVNFKSSNEMMMNLLFIHVKYSGDTEN 398


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 87  DSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCXVSIKSSFENQANNTDN 230
           D +  L S  F+    V+        + NK     K  FEN+ N+T N
Sbjct: 150 DQISSLRSGLFSNQREVESLEQLVHEQLNKLNTESKMEFENRKNDTKN 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,709
Number of Sequences: 5004
Number of extensions: 40417
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)