Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120900.seq
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0409 - 28723534-28724646                                         28   4.6  
12_02_0672 - 21726416-21726664,21727654-21727744,21727914-217279...    27   8.1  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   8.1  
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    27   8.1  

>02_05_0409 - 28723534-28724646
          Length = 370

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 361 LVHVGXRRRIVICLQVLHNGPKLGHLFDELVAQK 260
           LV  G R  +V+ +     GPKLGH+F+ LV+ K
Sbjct: 240 LVAAGDRLLLVLFMM----GPKLGHMFETLVSVK 269


>12_02_0672 -
           21726416-21726664,21727654-21727744,21727914-21727981,
           21728684-21728809,21728893-21729113,21729876-21729903
          Length = 260

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = -3

Query: 253 KMFFTLCMLSVLLA*FSKLLFMETXHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSR 74
           K F T    +++L   SK +FM++  ++++   +RP PS   + ++ + +++   +  S 
Sbjct: 140 KNFITAFFRNLMLVTTSKTIFMDSSDIISANSLLRP-PS---MRVRDYRSEQQQGAARST 195

Query: 73  NNCASKHTF 47
           + CA   TF
Sbjct: 196 SCCAMNRTF 204


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 40  ASKTCVLKRNCYEMKSIRCVFYFQNISTKA*SWTVKVLLF 159
           A K+  +   C E+ +  C+  F  + +KA SW V+ LL+
Sbjct: 27  AIKSSEVALKCSELDTTNCLGPFLTLGSKAGSWCVRHLLW 66


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -2

Query: 551 TSVLEIGP--KQHVQHEEXCQTWVLK 480
           T  + +GP  K+++ H+E C+TW ++
Sbjct: 562 TVTVSVGPAIKENIGHQEDCETWRIR 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,955,261
Number of Sequences: 37544
Number of extensions: 232001
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)