Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120900.seq
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         28   4.8  
SB_26359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_39141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)          27   8.3  

>SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 162 TEFNKCXVSIKSSFENQANNTDNIHNVKNIFRYFCATSSSNKCPNLG 302
           +E ++   S  +S     N+  N++N+ +  R   AT ++N+C NLG
Sbjct: 288 SETSQSNESKNNSLPRSLNSQHNVYNIASGSRKNSATINTNECSNLG 334


>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 282 NKCPNLGPLCNTCK 323
           NK PNLG LC TC+
Sbjct: 470 NKAPNLGGLCRTCE 483


>SB_26359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 207 NQANNTDNIHNVKNIFRYFCATSSSNKCPNLG 302
           N  N+  NI   + I   FCAT+SSN     G
Sbjct: 13  NSCNHEKNIIGTQKIVDLFCATTSSNNIHERG 44


>SB_39141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 135 VDGKGLTFFTEFNKCXVSIKSSFENQANNTDNIHNVKN 248
           VD KG TF   FN C  +  ++  N  NN +N +N  N
Sbjct: 70  VDRKG-TFIDSFNFCNNNNNNNNNNNNNNNNNNNNNNN 106


>SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 133 IKLWLKYFENKKHNESISSRNNCASKHTFSKRSYVLNLKLYCNL 2
           IKLWLK   N  +NE +S + + A  +  +K  +   +K   +L
Sbjct: 361 IKLWLKLSNNNGNNEKLSRKASAAISNYENKNFWHRKIKQILHL 404


>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
          Length = 611

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -3

Query: 133 IKLWLKYFENKKHNESISSR-----NNCASKHTFSKR 38
           IKLWLK   N  +NE +S +     +NC +K+ + ++
Sbjct: 189 IKLWLKLSNNNGNNEKLSRKAFATISNCENKNFWHRK 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,837,322
Number of Sequences: 59808
Number of extensions: 290856
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)