Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120900.seq
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    28   5.5  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    27   9.5  
AL032646-12|CAA21685.2|  411|Caenorhabditis elegans Hypothetical...    27   9.5  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      27   9.5  

>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 454 LVEGAQRGRXVSAFALETLNFVCGLAXXTHD 362
           +  G Q G+  SA   ET++FVC L    +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
 Frame = -3

Query: 262 KYRKM--FFTLCMLSVLLA*FSKLLFMETXHLLNSVKKVRPLPSTIK--LW--LKYFENK 101
           K++ M  F+ + +++++     KL   E    LN+  K + + + IK   W  L  FEN 
Sbjct: 2   KFKSMIIFYFIFVIAIIPIVTEKLSLKENKERLNTCGKDKDIYNGIKNNRWHILAAFENG 61

Query: 100 KHNESISSRNNCASKHTFSKRSYVLNLKL 14
            + E ISS +  +++H  +    +LN ++
Sbjct: 62  NNIEYISSASLISNRHFITSAFSILNSQM 90


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 42   FENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCXVSIKSSFENQANN 221
            FEN  FEA  +  E  S   L S +    +  DG+G     +  +  +S+K  FE +  N
Sbjct: 891  FENEKFEA--MSSEAISSNKLLSAFLPGMIKKDGRGRQKTAKEQEIEISVKKMFERKVQN 948

Query: 222  TD 227
             D
Sbjct: 949  DD 950


>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 175 LLNSVKKVRPLPSTIKLWLKYFENKKHN-ESISSRNNCASKHTFSKRSYVLNLKLYCN 5
           L +  +KV  L    K  LK F+    +  S  S  NC +K    K  YV ++K YC+
Sbjct: 77  LSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTKSDDEKDKYVESIKQYCD 134


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 25  LTRTTASKTCVLKRNCYEMKSI--RCVF 102
           +TRTT  K C L  NC+    I  +CVF
Sbjct: 36  ITRTTPVKKCYLGENCFTKTPITQKCVF 63


>Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical
           protein T25E12.8 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 454 LVEGAQRGRXVSAFALETLNFVCGLAXXTHD 362
           ++ G Q G+  S     T++FVC L    HD
Sbjct: 209 IITGTQAGQWKSGLCNMTMSFVCELPPTVHD 239


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 147 GLTFFTEFNK---CXVSIKSSFENQANNTDNI 233
           G+TFFT+ NK   C V + +S   + NNT  I
Sbjct: 762 GITFFTKANKCSHCDVRVHASCAPRVNNTCGI 793


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 317  LQTYYNPTPXPDVDEIMCXXCKPANKIQCFECKCRYXAXSLS 442
            L T YNP    D   + C  C   + I   +C C Y   + S
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAYHNDTFS 2101


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 317  LQTYYNPTPXPDVDEIMCXXCKPANKIQCFECKCRYXAXSLS 442
            L T YNP    D   + C  C   + I   +C C Y   + S
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAYHNDTFS 2101


>AL032646-12|CAA21685.2|  411|Caenorhabditis elegans Hypothetical
           protein Y54E2A.12 protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   LQYSLRFNTYDRFENVCFEAQLLRDEIDSL 95
           L  + RFN Y  F ++C    L+  E+D+L
Sbjct: 184 LSINPRFNYYQGFHDICLTVLLVCGEVDAL 213


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 317  LQTYYNPTPXPDVDEIMCXXCKPANKIQCFECKCRYXAXSLS 442
            L T YNP    D   + C  C   + I   +C C Y   + S
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAYHNDTFS 2101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,255
Number of Sequences: 27780
Number of extensions: 234334
Number of successful extensions: 753
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)