Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120900.seq
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04800.1 68416.m00518 mitochondrial import inner membrane tra...    31   0.73 
At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein...    27   6.8  
At5g51890.1 68418.m06436 peroxidase-related similar to peroxidas...    27   9.0  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    27   9.0  

>At3g04800.1 68416.m00518 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 188

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 9   QYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCXVS 188
           Q   ++  Y+ ++ V    + L +   S  FLF +   +  +  G+ LTFFT +  C  S
Sbjct: 12  QQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGS 71

Query: 189 IKSSFE 206
           +  +F+
Sbjct: 72  VLGAFK 77


>At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein /
           molybdenum cofactor biosynthesis enzyme CNX3 (CNX3)
           identical to molybdopterin biosynthesis CNX3 protein
           SP|Q39056 from [Arabidopsis thaliana]
          Length = 270

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 242 KKHFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPXPD 352
           K+ FS  + DEF  Q+     + Q +Q+ +   P PD
Sbjct: 22  KRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPD 58


>At5g51890.1 68418.m06436 peroxidase-related similar to peroxidase
           [Spinacia oleracea] gi|2956707|emb|CAA76376
          Length = 312

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 195 SSFENQANNTDNIHNVKNIFRYFCATSSSNKCP 293
           SSFE++  N    H++     Y  A +   KCP
Sbjct: 189 SSFESRLQNFSKFHDIDPSMNYAFAQTLKKKCP 221


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -3

Query: 196 LFMETXHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSRNNCASKHTFSKRSYVLNLK 17
           + +   H+L + +KV P    I   ++Y + K H   +      A +H     + V  LK
Sbjct: 497 VILHALHILKT-EKVMPTEPNISDCIQYGDPKHHGTDVKKALESALEHHMIMMTNVGKLK 555

Query: 16  LY 11
           LY
Sbjct: 556 LY 557


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,164
Number of Sequences: 28952
Number of extensions: 200530
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)