Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120899.seq
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    28   0.057
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      26   0.30 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   1.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.7  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 0.057
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 110 MISYNLVKETGIEIPHSQDVCNDETAAQNCK 202
           M   NL+KE   E+   Q +CN E A   C+
Sbjct: 30  MSDINLIKEEFDELGRLQRICNGEVAVNKCE 60


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 276 RANHICDFVTIVGRKKVWVSFGQVVRNV 359
           R  H+   + +V R  VWVSF Q  +NV
Sbjct: 19  RGEHMVGTIVVVVRG-VWVSFNQTAQNV 45


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 564 TYKYSSVAKSFGLIIINIMTIL 629
           +YKYS+VAKS  L    + ++L
Sbjct: 106 SYKYSTVAKSAALRATMVQSVL 127


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 20  YVSNVVYEYTNNYYMV 67
           ++SN+  +YT  YY +
Sbjct: 508 FLSNLANDYTPEYYQI 523


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 20  YVSNVVYEYTNNYYMV 67
           ++SN+  +YT  YY +
Sbjct: 456 FLSNLANDYTPEYYQI 471


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,323
Number of Sequences: 336
Number of extensions: 3432
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)