Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120899.seq
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0005 + 30952287-30952762,30952973-30953282                       30   1.3  
12_02_1224 + 27158810-27161366,27161593-27161969                       30   1.8  
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    29   3.1  
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113...    28   7.2  
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099     28   7.2  

>03_06_0005 + 30952287-30952762,30952973-30953282
          Length = 261

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +2

Query: 41  EYTNNYYMVDNRVFVVTFDKIRFMISYNLVKETG--IEIPHSQDVCNDETAAQNCKKCHF 214
           E  +   MV +  FV T  K++  + Y+ +  +   I IP+ +     ET A  C    F
Sbjct: 118 EVADKNLMVLSLSFVFTSSKLKHYLLYDAIHASMSMIPIPNWKPRFPKETPASFCHHVKF 177

Query: 215 VDVHHTFKAALT 250
               H F+A LT
Sbjct: 178 TSSSHAFRADLT 189


>12_02_1224 + 27158810-27161366,27161593-27161969
          Length = 977

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 394 LSRKESNEIETASNNFFVSPYVSQILKYS--ESVKFPDNPQTNMWW 525
           LSR  +  +   SNN+F   + + I   +  E   F +NP  ++WW
Sbjct: 148 LSRMPALRVLDVSNNYFSGAFPTSIANVTTLEVANFNENPGFDIWW 193


>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 468 YLTHIR-RYKKIIRCSLNFITLFTTKHN 388
           YL H+  R+ KI+ CSLN + L +TKH+
Sbjct: 608 YLRHLTLRHLKIV-CSLNLLRLMSTKHD 634


>07_03_1732 +
           29109612-29110623,29110712-29110786,29111176-29111333,
           29111714-29111937,29112136-29112745
          Length = 692

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 122 NLVKETGIEIPHSQDVCNDETAAQNCKKCHFVDVHHTFKAAL 247
           NLV + G   PH + V N ET  +  +     DV  +  A L
Sbjct: 619 NLVADVGRSFPHQEQVLNGETGGEILRNNAPADVQSSLMAFL 660


>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
          Length = 575

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 217 DKMAFFTILCSRLVVAHILRMRNFYAGFFNQIVRNHKSNF 98
           D   FF+ LCS    AH+   RN+ AG   ++ R  +S +
Sbjct: 491 DPTGFFSRLCSE---AHLAADRNYLAGVIGEVNRYRRSRW 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,116,799
Number of Sequences: 37544
Number of extensions: 276113
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)