Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120899.seq
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15)        29   4.2  
SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)                 27   9.7  

>SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15)
          Length = 169

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 447 IAVCESNIKVFGKCKVSRQSPNKYVVDNLNLIVNK 551
           + +  S +K  G    SRQ+ NKY+V   NL  NK
Sbjct: 14  VDMISSAVKNLGGKGASRQAINKYIVKEFNLTENK 48


>SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)
          Length = 298

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 370 FYLDTFRTTCPKETHTFFRPTI 305
           F L  F+T CP E+H  FR ++
Sbjct: 64  FVLLAFQTLCPSESHPLFRRSV 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,823,353
Number of Sequences: 59808
Number of extensions: 367924
Number of successful extensions: 815
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)