Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120899.seq
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    29   2.8  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    29   2.8  
Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   3.7  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   3.7  
AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and trans...    29   3.7  
Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U80838-7|AAC71112.3|  581|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL031634-3|CAA21036.1|  556|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 457  VSQILKYSESVKFPDNPQTNMWWTI 531
            +S  +++S+ +KF D  +TN+ WT+
Sbjct: 941  ISHKIEFSDEIKFIDGSKTNLQWTL 965


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 457  VSQILKYSESVKFPDNPQTNMWWTI 531
            +S  +++S+ +KF D  +TN+ WT+
Sbjct: 941  ISHKIEFSDEIKFIDGSKTNLQWTL 965


>Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical
           protein K02C4.4 protein.
          Length = 723

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 14  AKYVSNVVYEYTNNYYMVDNRVFVVTF 94
           AK   N+ YEY ++Y+M D+  F+  F
Sbjct: 424 AKTDGNLRYEYDDHYFMTDSEEFIYEF 450


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 385 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 507
           P    RKE+ E+E    N     YV Q+    ++ K P NP
Sbjct: 244 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 284


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 385 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 507
           P    RKE+ E+E    N     YV Q+    ++ K P NP
Sbjct: 348 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 388


>AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and
           transglutaminase domainprotein protein.
          Length = 723

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 14  AKYVSNVVYEYTNNYYMVDNRVFVVTF 94
           AK   N+ YEY ++Y+M D+  F+  F
Sbjct: 424 AKTDGNLRYEYDDHYFMTDSEEFIYEF 450


>Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical
           protein F10F2.5 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 364 DKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPD 501
           D   ++  ++LSR+E+  +E  S+  +   Y  QI+K     K PD
Sbjct: 324 DAATWSSAVVLSRRENEGLEVMSDARYAPIYCEQIVKGLSYTKCPD 369


>U80838-7|AAC71112.3|  581|Caenorhabditis elegans Hypothetical
           protein F47F6.3 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 179 ETAAQNCKKCHFVDVHHTF 235
           E A + CKKC F+D++  F
Sbjct: 516 EIAGRQCKKCRFIDLNPAF 534


>AL031634-3|CAA21036.1|  556|Caenorhabditis elegans Hypothetical
           protein Y32B12C.3 protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 343 KLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQ-ILK 474
           K+ E+YQ++ L T  I L      E+E AS  F V P+V + ILK
Sbjct: 5   KINEVYQNRKLQTTEISL------EVEDASQLFLVLPFVDRNILK 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,475,448
Number of Sequences: 27780
Number of extensions: 297731
Number of successful extensions: 813
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)