Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120899.seq
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containi...    30   1.5  
At3g47060.1 68416.m05110 FtsH protease, putative contains simila...    29   2.6  
At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein ...    28   4.5  
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to...    28   6.0  
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to...    28   6.0  

>At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 745

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 465 NIKVFGKCKVSRQSPNKYVVDNLNLIVNKKSTLTYK 572
           N+ + G CK+ + +  K ++DN+N+   K +  TY+
Sbjct: 351 NVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQ 386


>At3g47060.1 68416.m05110 FtsH protease, putative contains
           similarity to FtsH protease GI:13183728 from [Medicago
           sativa]
          Length = 802

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +3

Query: 483 KCKVSRQSPNKYVVDNLNLIVNKK 554
           +C+V RQ+PN++V +++ L + KK
Sbjct: 36  RCRVYRQNPNRFVSNSITLPLQKK 59


>At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 395

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +3

Query: 444 CIAVCESNIKVFGKCKVSRQSPNKYVVDNLNLIVNKKSTLTYKYSSVAKSFGLIIIN 614
           C  +C+   K   KC V     + + + ++  + + K  LTY    V + F  +  N
Sbjct: 172 CCLMCDKKHKTIEKCMVHMHKFHGFFIPDIEYLKDPKGFLTYLGLKVKRDFVCLYCN 228


>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -2

Query: 450 RYKKIIRCSLNFITLFTTKHNRQSK*IFILIHFVQLAQKKPTLSFAQRL*QSHK 289
           +Y  +I+  L+   +  +K  RQ   +FI+ + +   +  P++  A++    HK
Sbjct: 146 KYLTVIKDVLDIANVLNSKWKRQEPLVFIVCYDILFGKDTPSIGDAEKFLMRHK 199


>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -2

Query: 450 RYKKIIRCSLNFITLFTTKHNRQSK*IFILIHFVQLAQKKPTLSFAQRL*QSHK 289
           +Y  +I+  L+   +  +K  RQ   +FI+ + +   +  P++  A++    HK
Sbjct: 146 KYLTVIKDVLDIANVLNSKWKRQEPLVFIVCYDILFGKDTPSIGDAEKFLMRHK 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,918
Number of Sequences: 28952
Number of extensions: 250246
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)