Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120898.seq
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 62 5e-11
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 46 5e-06
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 40 3e-04
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 33 0.038
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 1.9
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 5.8
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 25 5.8
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 25 7.7
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 62.1 bits (144), Expect = 5e-11
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +2
Query: 257 GISAAVSKTAVXPIERVKLLLQVQ-HVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGN 433
G+SAAVSKTA PIERVKLL+Q Q + + R KGI + F R E+G++S WRGN
Sbjct: 35 GVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGN 94
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 441 NVIRYFPTQALNFAFKGKXKQVF 509
NV+RYFPTQALNFAFK K K++F
Sbjct: 97 NVLRYFPTQALNFAFKDKFKKMF 119
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 45.6 bits (103), Expect = 5e-06
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +2
Query: 257 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGN 433
G++A VS+TAV P+ER+K++ QVQ+ ++ + V+I +GL+ F+RGN
Sbjct: 28 GVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGN 79
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/68 (22%), Positives = 28/68 (41%)
Frame = +2
Query: 257 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGNF 436
G + + +T P + ++ QV + K I A I K +G+ F+RG
Sbjct: 234 GFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYS 290
Query: 437 XQRHQVLP 460
+++P
Sbjct: 291 SNMLKIIP 298
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 39.5 bits (88), Expect = 3e-04
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = +2
Query: 233 VR*GLPGCGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGL 412
V+ G+ G G + V+K+ V P++RVK+L Q H S + A R G+ A I GL
Sbjct: 18 VKSGIAG-GTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSR-HGLYKAIKHIYHVYGL 75
Query: 413 LSFWRGNFXQRHQVLP 460
++G+ ++V P
Sbjct: 76 HGLYQGHTATLYRVFP 91
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 32.7 bits (71), Expect = 0.038
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 257 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRG 430
G+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++G
Sbjct: 212 GLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFKG 268
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 387 TKASTIPLXRWSAAICLLTCCTWSSSLTRSMGXTAV 280
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 377 DAFVRIPKEQGLLSFWRGNF 436
DAF +I K +GL +F+RG F
Sbjct: 235 DAFRKIYKYEGLAAFYRGLF 254
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +2
Query: 260 ISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRG 430
++ ++ PI+ VK +Q ++A + K + +I + GLL FW G
Sbjct: 212 VAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSG 262
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 245 LPGCGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFW 424
L G GI+ ++ P E V+ L+ S I + G++ F + EQG++ +
Sbjct: 276 LGGAGIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLY 332
Query: 425 RGNFXQRHQVLPD 463
G +V+P+
Sbjct: 333 GGLTAHLLRVVPN 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,071
Number of Sequences: 5004
Number of extensions: 29114
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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