Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120898.seq
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   3e-08
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)             50   1e-06
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   2e-06
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)                   38   0.006
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             36   0.017
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)              36   0.023
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.030
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)                    33   0.16 
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)                32   0.37 
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)         31   0.65 
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)             30   1.1  
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)             30   1.5  
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)                    29   3.5  
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   4.6  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.0  

>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
 Frame = +2

Query: 257 GISAAVSKTAVXPIERVKLLLQVQ-HVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGN 433
           G +A +SKTA  PIERVKLL+Q Q  + K    D   KG++D   R  + +G LSFWRGN
Sbjct: 17  GAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGN 76



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 441 NVIRYFPTQALNFAFKGKXKQVFSAALT 524
           N IRYFPTQALNFAFK + K +F    T
Sbjct: 79  NCIRYFPTQALNFAFKDQVKALFKPKKT 106


>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 26/68 (38%), Positives = 45/68 (66%)
 Frame = +2

Query: 257 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGNF 436
           GI+ AVS+T+V P+ERVK+LLQ+Q        + + KG++   ++I KE+G+L +++GN 
Sbjct: 42  GIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNG 95

Query: 437 XQRHQVLP 460
               ++ P
Sbjct: 96  TNVIRIFP 103


>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
          Length = 76

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = +2

Query: 257 GISAAVSKTAVXPIERVKLLLQVQ-HVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWR 427
           G +A +SKTA  PIERVKLL+Q Q  + K        KG+VD  +R  + +G+ SFWR
Sbjct: 18  GAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 28/71 (39%), Positives = 40/71 (56%)
 Frame = +2

Query: 251 GCGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRG 430
           G G  A VS+TA  P++R+K+LLQVQ      A+     GIV  F  + +E G+ S WRG
Sbjct: 142 GGGALAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRG 195

Query: 431 NFXQRHQVLPD 463
           N     ++ P+
Sbjct: 196 NGANVIKIAPE 206



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/67 (23%), Positives = 36/67 (53%)
 Frame = +2

Query: 260 ISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGNFX 439
           ++   S+T++ P+E +K  L ++   +        +G++ A   I +++G+ SF+RG F 
Sbjct: 239 MAGVASQTSIYPLEVLKTRLAIRKTGQY-------RGLLHAASVIYQKEGIRSFYRGLFP 291

Query: 440 QRHQVLP 460
               ++P
Sbjct: 292 SLLGIIP 298


>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 375

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +2

Query: 257 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGN 433
           G SA ++++   P+E VK+L QV          +   G++  F  + K +G+ +FW+GN
Sbjct: 66  GTSAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKREGIKAFWKGN 117



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +2

Query: 263 SAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRG 430
           S  ++   V P E +K  L VQHV+K  A     KG+  A   I +E+G+L+ ++G
Sbjct: 162 STLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 214


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +2

Query: 260  ISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGNFX 439
            I  A   TAV PI+ VK  +Q Q     + A++  K  +D F ++ + +G +  +RG   
Sbjct: 922  IKKATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLP 979

Query: 440  QRHQVLPD 463
            Q   V P+
Sbjct: 980  QLLGVSPE 987


>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
          Length = 577

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +2

Query: 263 SAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRG 430
           S  ++   V P E +K  L VQHV+K  A     KG+  A   I +E+G+L+ ++G
Sbjct: 431 STLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483


>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +2

Query: 254 CG-ISAAVSKTAVXPIERVKLLLQVQ---HVSKQIAADQRXKGIVDAFVRIPKEQGLLSF 421
           CG +S  +SK  + P + +K  +QVQ      +     Q+  G+ D F  I KE+G +  
Sbjct: 35  CGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGL 94

Query: 422 WRG 430
           ++G
Sbjct: 95  FKG 97


>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 276

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
 Frame = +2

Query: 257 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAA---------DQRXKGIVDAFVRIPKEQG 409
           GI+A++++ A  PI+  K+ LQ+Q  S  +A+         D   +G++   V + K +G
Sbjct: 22  GIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTMVTLFKTEG 81

Query: 410 LLSFWRGNFXQRHQVL 457
           + + ++G     H+ L
Sbjct: 82  MKTMYKGLIPGIHRQL 97


>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
          Length = 114

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 248 PGCGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWR 427
           P  G+S   +KT   P+ER+K+L Q Q+         +   +  A   I K++GL  +++
Sbjct: 60  PPLGLSTCCAKTTTAPLERLKILFQAQN------KHYKNMSVFGALKAIYKKEGLQGYYK 113


>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
          Length = 247

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 293 PIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRG 430
           P ERVK LLQVQ   K+     R +G+ D  +++ +  GL   ++G
Sbjct: 180 PTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222


>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
          Length = 95

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = +2

Query: 332 VSKQIAADQRXK--GIVDAFVRIPKEQGLLSFWRG 430
           V  ++A  Q+ K  G+++AF RI +++G+ +F+RG
Sbjct: 13  VRARLAITQKKKYTGLINAFTRIYRDEGMRTFYRG 47


>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 374 VDAFVRIPKEQGLLSFWRG 430
           +DA ++IP+ +GL S WRG
Sbjct: 64  IDALIKIPRYEGLSSLWRG 82


>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
          Length = 302

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 251 GCGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRG 430
           GC ++   +  AV P++ +K  LQ+ +  +    +    GI+D   +I   +GL +F++G
Sbjct: 212 GC-LAGMTASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKG 267


>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 434

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 257 GISAAVSKTA-VXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRG 430
           G +A V  TA   P++ V+  L VQ +S +  ++    GIV A  RI  E+G+   ++G
Sbjct: 35  GATAGVVATASTHPLDVVRARLTVQDMSTRSISNYT--GIVSALRRIHIEEGIRGLYKG 91


>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 792

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 41  ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPXSACAATPTSTYSPS 184
           ++ ++  Y  C  + E +P +       +    ++D  SAC A P  TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 89   ITPN----LLFKNQELVFRDPXSACAATPTSTYSPSEDHII 199
            +TPN    LL +  +   R+P SA      S YSPSE  I+
Sbjct: 963  LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,773,334
Number of Sequences: 59808
Number of extensions: 235933
Number of successful extensions: 575
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)