Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120898.seq
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   110   8e-27
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   110   8e-27
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  110 bits (265), Expect = 8e-27
 Identities = 53/98 (54%), Positives = 63/98 (64%)
 Frame = +2

Query: 257 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGNF 436
           G++AA+SKT V PIERVKLLLQVQH+SKQI+ +QR KG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 437 XQRHQVLPDPXXXXXXXXXXXXXXXXXXDKKTQFXRYF 550
               +  P                    DK TQF RYF
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYF 115



 Score = 49.2 bits (112), Expect = 3e-08
 Identities = 24/41 (58%), Positives = 26/41 (63%)
 Frame = +3

Query: 441 NVIRYFPTQALNFAFKGKXKQVFSAALTRRRSSXVTSAGNL 563
           NVIRYFPTQALNFAFK K KQVF   + +         GNL
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNL 119



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 207 MSNLADPVAFAKDFLA 254
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  110 bits (265), Expect = 8e-27
 Identities = 53/98 (54%), Positives = 63/98 (64%)
 Frame = +2

Query: 257 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRXKGIVDAFVRIPKEQGLLSFWRGNF 436
           G++AA+SKT V PIERVKLLLQVQH+SKQI+ +QR KG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 437 XQRHQVLPDPXXXXXXXXXXXXXXXXXXDKKTQFXRYF 550
               +  P                    DK TQF RYF
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYF 115



 Score = 49.2 bits (112), Expect = 3e-08
 Identities = 24/41 (58%), Positives = 26/41 (63%)
 Frame = +3

Query: 441 NVIRYFPTQALNFAFKGKXKQVFSAALTRRRSSXVTSAGNL 563
           NVIRYFPTQALNFAFK K KQVF   + +         GNL
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNL 119



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 207 MSNLADPVAFAKDFLA 254
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 398 KEQGLLSFWRGNFXQRHQVLPD 463
           KEQG +S   G   Q  +VLP+
Sbjct: 681 KEQGQISQVGGGIQQNVEVLPE 702


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 132 VIPHPRVPQLPPRHIHLVKIT 194
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,534
Number of Sequences: 438
Number of extensions: 2002
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)