Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120897.seq
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 128 7e-31
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 30 0.24
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 27 3.0
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.9
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 26 3.9
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 5.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.1
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 9.1
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 25 9.1
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 9.1
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 9.1
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 128 bits (309), Expect = 7e-31
Identities = 61/106 (57%), Positives = 77/106 (72%)
Frame = +3
Query: 255 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 434
KKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+VFP EI+GKR
Sbjct: 85 KKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRT 142
Query: 435 RVKLDGSQLIKVHLDKNQQTTIEHKWTPSSSVYKKLTGREVTFRVP 572
R DG + IKV LD T+++K SSVY KLTG+ VTF P
Sbjct: 143 RQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
Score = 69.3 bits (162), Expect = 4e-13
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 KIIKASGAEADSFETSISQALVELETNS-DLKAQLXELYITKAKEIELHN-KKSIIIYVP 198
KI+K S ++ + ++Q L +LE++S D+ +L L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 199 MPKLKAFQKIQIRLVRELER 258
P LKAF K Q RL RELE+
Sbjct: 66 QPLLKAFHKCQARLTRELEK 85
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.3 bits (65), Expect = 0.24
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 273 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 452
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 453 SQLIKVHLD-KNQQTTIEHK 509
S ++ LD K+ Q EHK
Sbjct: 1651 SYILNPSLDLKHTQEMFEHK 1670
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 517 GVHLCSIVVCWFLSKCTLMSC 455
GV+L SI++ FLS C L C
Sbjct: 138 GVYLYSILILLFLSHCVLRCC 158
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 344 KEATLKDIDLCVRCYPRGLGLPC 412
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 628 FRFLCLL*SHRPRFTNKVRGTRKVTSRPVSFLYTE 524
FR +C+L PR + K ++ PV+F YT+
Sbjct: 33 FRRICILKGVYPREPKNKKKANKGSTAPVTFYYTK 67
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -3
Query: 589 FTNKVRGTRKVTSRPVSFLYTELEGVHLCSIVVCWFLSKCTLMSCEPSNLT-LMRLPTIS 413
F +K+R K R + L + V + CW+L + EP+N +R I+
Sbjct: 817 FESKLRQENKPKIRAMKILKSASNAV----VTACWYLFYVAVQQIEPTNSQYFLRTLDIT 872
Query: 412 AGKTKSSRIASYTEV 368
K +A + +
Sbjct: 873 LNNEKLKSVAKFWRI 887
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -3
Query: 526 ELEGVHLCSIVVCWFLSKCTL 464
E++G+ LC++V +F+ CT+
Sbjct: 211 EIDGISLCNLVHKFFVDACTV 231
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 1 RHEVKMSTKIIKASGAEADSFETSISQALVELETN 105
R + I +SG+E +F+T+ISQ E++T+
Sbjct: 23 RFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTS 57
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 362 P*AWPLLFVSNTSFVAGLRQDLTVSN 285
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 633 FFLDFYVYCKVIGLGLQIRFGELERSLRVPLASCIQNW 520
FF+D YV I L F +++ + P S IQ W
Sbjct: 441 FFVDDYVPSAYITLTPTFSFSDIKHAFTKPSLSDIQYW 478
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 306 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 431
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 493 VCWFLSKCTLMSCEPSNLTLMR 428
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,375
Number of Sequences: 5004
Number of extensions: 47654
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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