Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120897.seq
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 112 3e-25
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 109 2e-24
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 46 2e-05
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.8
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 2.3
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.1
03_02_0488 - 8824980-8825267,8825364-8827775 29 4.1
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 5.4
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 28 7.1
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 27 9.4
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 9.4
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 112 bits (269), Expect = 3e-25
Identities = 55/108 (50%), Positives = 77/108 (71%)
Frame = +3
Query: 255 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 434
KKFSGK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRI
Sbjct: 86 KKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRI 141
Query: 435 RVKLDGSQLIKVHLDKNQQTTIEHKWTPSSSVYKKLTGREVTFRVPRT 578
R +LDG+++IK+ LD ++ E+K S+VY++L G++V F P T
Sbjct: 142 RYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYPMT 189
Score = 73.7 bits (173), Expect = 1e-13
Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 KIIKASGAEADSFETSISQALVELET-NSDLKAQLXELYITKAKEIELH-NKKSIIIYVP 198
KI K G E FE S++QA +LE N +LK++L +LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 199 MPKLKAFQKIQIRLVRELER 258
KAF+KI +RLVRELE+
Sbjct: 67 YRLRKAFKKIHVRLVRELEK 86
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 109 bits (261), Expect = 2e-24
Identities = 54/108 (50%), Positives = 74/108 (68%)
Frame = +3
Query: 255 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 434
KKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+
Sbjct: 99 KKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRV 154
Query: 435 RVKLDGSQLIKVHLDKNQQTTIEHKWTPSSSVYKKLTGREVTFRVPRT 578
R LDG +++K+ LD ++ E+K SSVY++L G++V F P T
Sbjct: 155 RYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMT 202
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Frame = +1
Query: 79 QALVELET-NSDLKAQLXELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 252
QA +LE N +LK+ L +LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 253 ER 258
E+
Sbjct: 98 EK 99
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/57 (45%), Positives = 37/57 (64%)
Frame = +3
Query: 255 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 425
KKFSGK VVF R+I+ +P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 71 KKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 133 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELER 258
+Y+ ++ N K ++I+V KAF+KI +RLV+ELE+
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEK 71
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 402 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 509
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 351 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 467
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 85 LVELETNSDLKAQLXELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 85 LVELETNSDLKAQLXELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 34 KASGAEADSFETSISQALVELETNSDLKAQLXELYITKAKEIELHNKKSIIIY-VPMPKL 210
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 211 KAFQKI 228
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 85 LVELETNSDLKAQLXELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 541 SFLYTELEGVHLCSIVVCWFLSKCTLMS 458
SF + G+HL VCWF+ T S
Sbjct: 267 SFEFLHRHGLHLLGTTVCWFVLDVTFYS 294
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 338 QTKEATLKDIDLCVRCYPRGLG 403
Q ++++LK CVRC+P G G
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTG 205
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 82 ALVELETNSDLKAQLXELYITKAKEIELHNKKSIIIY 192
A++E+E N DL + L T+ E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,857
Number of Sequences: 37544
Number of extensions: 319389
Number of successful extensions: 800
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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