Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120897.seq
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              108   4e-24
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_41040| Best HMM Match : Calx-beta (HMM E-Value=2.7e-07)             27   9.6  
SB_32460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  108 bits (259), Expect = 4e-24
 Identities = 51/80 (63%), Positives = 66/80 (82%)
 Frame = +1

Query: 19  STKIIKASGAEADSFETSISQALVELETNSDLKAQLXELYITKAKEIELHNKKSIIIYVP 198
           S KI+K  G  A+ FE  ISQA++ELE NSD+KAQL ELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 199 MPKLKAFQKIQIRLVRELER 258
           +P+++AFQKIQ RLVRELE+
Sbjct: 68  VPQIRAFQKIQTRLVRELEK 87



 Score = 51.2 bits (117), Expect(2) = 4e-16
 Identities = 24/35 (68%), Positives = 28/35 (80%)
 Frame = +3

Query: 255 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 359
           KKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 87  KKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 51.2 bits (117), Expect(2) = 4e-16
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +3

Query: 471 HLDKNQQTTIEHKWTPSSSVYKKLTGREVTFRVP 572
           HLDK QQTTI+HK    S+VYKKLTG++V F  P
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 417 IVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKWTPSSSVYKKLTGREVTFRVPRTL 581
           ++GK++R+K  G    +  LD    +T E+      SVY K   RE+ F V   L
Sbjct: 469 LIGKKVRLK--GFDGYRAQLDNRNDSTGEY------SVYTKFNNREIMFHVSTLL 515


>SB_41040| Best HMM Match : Calx-beta (HMM E-Value=2.7e-07)
          Length = 277

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 492 TTIEHKWTPSSSVYKKLTGREVTF 563
           TT++   T SS  + KLTG+++TF
Sbjct: 84  TTVDDTATASSGDFPKLTGQQITF 107


>SB_32460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 89  SNSKPTPTSKPNFXSFTLQKLKKLNYTIRSRSSSMCRCLN*RHFRRSRSGLSVSSKEVQW 268
           ++ + TP S+  +    L KL  +   + S   ++      RHFR +RS   +S   + +
Sbjct: 183 TSHRVTPASRLGYQILQLLKLYGITLLVISEKKTLIHGERNRHFRTARSNTQMSFDNMAY 242

Query: 269 *TC 277
             C
Sbjct: 243 VIC 245


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 496 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 389
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,368
Number of Sequences: 59808
Number of extensions: 357523
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)