Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120897.seq
         (633 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L20837-1|AAA03087.1|  192|Anopheles gambiae ribosomal protein S7...   173   3e-45
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    26   0.86 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    26   0.86 
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    24   3.5  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   8.1  

>L20837-1|AAA03087.1|  192|Anopheles gambiae ribosomal protein S7
           protein.
          Length = 192

 Score =  173 bits (422), Expect = 3e-45
 Identities = 83/106 (78%), Positives = 91/106 (85%)
 Frame = +3

Query: 255 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 434
           KKFSGKHVVF+ +R+ILPKP    R  NKQKRPRS  +T+VYDAILEDLVFPAE+VGKRI
Sbjct: 83  KKFSGKHVVFIAERRILPKPMRGRRDPNKQKRPRSPNVTAVYDAILEDLVFPAEVVGKRI 142

Query: 435 RVKLDGSQLIKVHLDKNQQTTIEHKWTPSSSVYKKLTGREVTFRVP 572
           RVKLDGSQLIKVHLDKNQQTTIEHK    +SVYKKLTGR+VTF  P
Sbjct: 143 RVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLTGRDVTFEFP 188



 Score =  116 bits (278), Expect = 8e-28
 Identities = 53/79 (67%), Positives = 67/79 (84%)
 Frame = +1

Query: 22  TKIIKASGAEADSFETSISQALVELETNSDLKAQLXELYITKAKEIELHNKKSIIIYVPM 201
           +K+IKA   E D+FET I QA++ELE NSDLK QL +LYIT+A+E+E +NKK+IIIYVP+
Sbjct: 5   SKVIKAGNGEPDAFETQIGQAILELEMNSDLKPQLRDLYITRAREVEFNNKKAIIIYVPV 64

Query: 202 PKLKAFQKIQIRLVRELER 258
           PK KAFQK+Q RLVRELE+
Sbjct: 65  PKQKAFQKVQTRLVRELEK 83


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +3

Query: 366 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT---IEHKW 512
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L     TT   +E  W
Sbjct: 35  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNLKNQIMTTNLWVEQSW 84


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +3

Query: 366 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT---IEHKW 512
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L     TT   +E  W
Sbjct: 35  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNLKNQIMTTNLWVEQSW 84


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 448 SNLTLMRLPTISAGKTKSSRIASYTEVNVLERGLFCLLATRVLWLGLGRIL 296
           +N  L+ +P  +   T SSR       +     L CLLAT V+W   G++L
Sbjct: 54  ANSRLVTVPAPAKELTDSSRSGGLPSSSS-SSSLSCLLATIVMWC-TGQVL 102


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 366 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT---IEHKW 512
           L S Y+ ++  +V   + +   +++KL  SQLI V+L     TT   +E  W
Sbjct: 31  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNLKNQIMTTNLWVEQTW 80


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,163
Number of Sequences: 2352
Number of extensions: 12144
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61886940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)