Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120897.seq
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   134   4e-32
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    28   6.4  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  134 bits (325), Expect = 4e-32
 Identities = 62/111 (55%), Positives = 85/111 (76%), Gaps = 1/111 (0%)
 Frame = +3

Query: 255 KKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 431
           KKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L++LV+PAE+VG+R
Sbjct: 84  KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRR 143

Query: 432 IRVKLDGSQLIKVHLDKNQQTTIEHKWTPSSSVYKKLTGREVTFRVPRTLF 584
           IRVKLDG ++ KVHLDK+ QT + HK    +SVY+KLTG++VTF  P  +F
Sbjct: 144 IRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDPIF 194



 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 44/78 (56%), Positives = 58/78 (74%)
 Frame = +1

Query: 25  KIIKASGAEADSFETSISQALVELETNSDLKAQLXELYITKAKEIELHNKKSIIIYVPMP 204
           K++K+ G      E  +SQAL++LETN D+++QL ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 205 KLKAFQKIQIRLVRELER 258
           +LKAF KI   LVRELE+
Sbjct: 67  QLKAFHKIHPALVRELEK 84


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 89  SNSKPTPTSKPNFXSFTLQKLKKLNYTIRSRSSSMCR 199
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 547 PVSFLYTELEGVHLCSIVVCWFLSKCTLMSCEPS 446
           P+S  Y   E    C+ VVC    KC L + +PS
Sbjct: 97  PLSVYYINFENYSACAAVVCPPSQKCELENGKPS 130


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 544 VSFLYTELEGVHL-CSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTEV 368
           +  +    EG+ + C   +C F+  C ++SC      ++R      GKT+ +R   Y   
Sbjct: 320 IPIVLNSAEGIMIYCQFTICTFIGVCCVISC-----CVLRTGGGGRGKTRPNR--EYLHT 372

Query: 367 NVLE 356
            VLE
Sbjct: 373 KVLE 376


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 111 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 25
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,046
Number of Sequences: 27780
Number of extensions: 271995
Number of successful extensions: 799
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)