Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120897.seq
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.26 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.26 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +3

Query: 366 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT---IEHKW 512
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L     TT   +E  W
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNLKNQIMTTNLWVEQSW 85


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +3

Query: 366 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT---IEHKW 512
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L     TT   +E  W
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNLKNQIMTTNLWVEQSW 85


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 366 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT---IEHKW 512
           L S Y+ ++  +V   + +   +++KL  SQLI V+L     TT   +E  W
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNLKNQIMTTNLWVEQSW 81


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 591 GLQIRFGELERSLRVPLASCIQNWKV 514
           G +    ELE++ R  L +C++  KV
Sbjct: 48  GSRTTHNELEKNRRAHLRNCLEKLKV 73


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 562 KVTSRPVSFLYTELEGVHLCSIVV 491
           KV  +PV F Y   +G H  S ++
Sbjct: 430 KVNRQPVWFYYYTYKGAHSISEIM 453


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 562 KVTSRPVSFLYTELEGVHLCSIVV 491
           KV  +PV F Y   +G H  S ++
Sbjct: 430 KVNRQPVWFYYYTYKGAHSISEIM 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,427
Number of Sequences: 438
Number of extensions: 2840
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)