Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120896.seq
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    63   3e-11
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   2.3  
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    27   2.3  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   4.0  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   7.0  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   7.0  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
 Frame = -3

Query: 636 YAGAQKNIGTSGVALVIVREDLLNQALPTMSLFIRL-------DS*LQTD--SILNTPPM 484
           +AGAQKN G +G+ +V VR+ +L +  P     + +       D  +  D  S+ NT P+
Sbjct: 210 FAGAQKNAGPAGITVVFVRDSVLARPTPAELHKLNIPVSPTVSDYKIMADNHSLYNTLPV 269

Query: 483 FAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPF 304
             ++ +   L+++  +GGL  +   + +K+ L+Y+T+++ +  Y + V    RS+MNV F
Sbjct: 270 ATLHAINLGLEYMLEHGGLVALEASSIEKSKLLYDTLDK-HDLYISVVEPAARSRMNVTF 328

Query: 303 RIGCPGDDALEKEFL 259
           RI       LE EFL
Sbjct: 329 RI---EPQELESEFL 340



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = -2

Query: 277 LRKRILEGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMKEF 131
           L    L  AE   L+QLKG+R VGGIRAS+YNA+++E+ + L+  ++ F
Sbjct: 335 LESEFLAEAEKHHLVQLKGYRSVGGIRASLYNAISVEQTRRLIDLLESF 383


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 234 ISPKVSAPSRILFLRHHHQDNQF*MAHSFYCE 329
           ++ K+  P+RI  LR +H+  Q    + FY E
Sbjct: 114 VAMKLRYPNRITILRGNHESRQITQVYGFYDE 145


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 321 KMNVPFRIGCPGDDALEKEFLKVLRLWDLFS*KDTETLAV 202
           K NV  ++G  GD ++ K  L V  +   F  + T+TL V
Sbjct: 6   KNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGV 45


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 234 ISPKVSAPSRILFLRHHHQDNQF*MAHSFYCE 329
           I+ K+  P RI  LR +H+  Q    + FY E
Sbjct: 101 IAFKIRYPQRITILRGNHESRQITQVYGFYDE 132


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 546 TWSVEPDSKDPL*Q*QALPQM 608
           TW ++PD KDP+ + +A+ ++
Sbjct: 302 TWELDPDEKDPMGKQEAIAEI 322


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 304 QNWLSW**CLRKRILEGAETLGL 236
           QNW+ W   + +R+LEG+   G+
Sbjct: 150 QNWIDWEEKIAERLLEGSNISGV 172


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 90  SNIYFLYVIWNLLFYIVVLIYVYN*N 13
           SN++F ++ W L F +   I++Y+ N
Sbjct: 73  SNLHFFFLFWLLNFILFFRIHLYSCN 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,690
Number of Sequences: 5004
Number of extensions: 57940
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)