Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120896.seq
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0398 + 3092577-3093857 111 3e-25
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 33 0.14
12_01_0197 + 1456296-1456668,1456930-1458746 31 0.58
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 31 0.58
06_03_0675 - 23428948-23431389 31 0.58
05_01_0493 + 4113869-4116728,4116859-4117370 31 0.58
06_01_0461 - 3280874-3281757,3281777-3282343,3282398-3283249,328... 31 1.0
10_01_0316 + 3479574-3482679,3482766-3483127 30 1.3
04_04_1420 + 33441260-33443704 30 1.3
04_04_1419 - 33433463-33436009 30 1.3
01_06_0199 - 27467548-27469992 30 1.3
06_01_0465 - 3304417-3306834 30 1.8
01_01_0490 + 3620523-3623403,3623524-3623996 30 1.8
06_03_0562 + 22188780-22188910,22189848-22190415 29 4.1
06_03_0548 + 22004338-22006746 29 4.1
12_01_0496 + 3939731-3939758,3940459-3942773 27 9.5
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 27 9.5
04_04_0484 - 25570798-25570964,25572641-25572679,25572718-255728... 27 9.5
03_06_0366 + 33408671-33408745,33409342-33409398,33410398-334104... 27 9.5
>03_01_0398 + 3092577-3093857
Length = 426
Score = 111 bits (268), Expect = 3e-25
Identities = 56/126 (44%), Positives = 77/126 (61%)
Frame = -3
Query: 636 YAGAQKNIGTSGVALVIVREDLLNQALPTMSLFIRLDS*LQTDSILNTPPMFAIYIMGRV 457
YAGAQKN+G SGV + IVR+DL+ A P + + + S+ NTPP FAIYI G V
Sbjct: 255 YAGAQKNVGPSGVTIAIVRKDLVGSAQPITPVMLDYKTHADNASLYNTPPCFAIYICGLV 314
Query: 456 LQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDA 277
+ + GGL + + KA ++Y+ I+ S G+Y PV K+VRS MNVPF + GD
Sbjct: 315 FEDLLAQGGLAEVEKKNAHKAGILYDAIDASGGYYICPVEKSVRSLMNVPFTLAKGGD-- 372
Query: 276 LEKEFL 259
EK+F+
Sbjct: 373 FEKQFI 378
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = -2
Query: 271 KRILEGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMKEF 131
K+ + A G++QLKGHR VGG+RASIYNA+ L V+ LV +MK+F
Sbjct: 375 KQFIAEAAKEGMVQLKGHRSVGGVRASIYNAMPLAGVEKLVAFMKDF 421
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 439 EWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
EWR R N+++G + L YL H +EW + C
Sbjct: 613 EWRQRFNIAVGVAKGLAYLHHE-CLEWVIHC 642
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = -2
Query: 478 HLYNGS--SITMDSK---EWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
++ NGS ++ +SK +W+ R N+++G + L YL H +EW + C
Sbjct: 517 YVENGSLANVLFNSKILLDWKQRFNIALGVAKGLAYLHHE-CLEWVIHC 564
>11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = -2
Query: 478 HLYNGS--SITMDSK---EWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
++ NGS ++ +SK +W+ R N+++G + L YL H +EW + C
Sbjct: 922 YVENGSLANVLFNSKILLDWKQRFNIALGVAKGLAYLHHE-CLEWVIHC 969
>06_03_0675 - 23428948-23431389
Length = 813
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 466 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
GS + EW+ R +++G + L YL H +EW + C
Sbjct: 604 GSEASQTLLEWKQRFKIALGVAKGLAYLHHE-CLEWVIHC 642
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 466 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN 374
G++ T EW +R +++G E LTYL H+
Sbjct: 869 GATTTAAVVEWEVRLAIAVGVAEGLTYLHHD 899
>06_01_0461 -
3280874-3281757,3281777-3282343,3282398-3283249,
3284503-3284644
Length = 814
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 439 EWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
+W R N++IG + L YL H +EW + C
Sbjct: 630 KWNQRYNIAIGVAKGLAYLHHE-CLEWIVHC 659
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 445 SKEWRIRRNVSIGNKESLTYLQHN 374
S +W +R +++G ESL+YL H+
Sbjct: 957 SLDWNVRHQIALGVAESLSYLHHD 980
>04_04_1420 + 33441260-33443704
Length = 814
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 436 WRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
WR R +++G ++L YL H +EW + C
Sbjct: 618 WRSRYKIAVGVAKALAYLHHE-CLEWIVHC 646
>04_04_1419 - 33433463-33436009
Length = 848
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 436 WRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
WR R +++G ++L YL H +EW + C
Sbjct: 612 WRSRYKIAVGVAKALAYLHHE-CLEWIVHC 640
>01_06_0199 - 27467548-27469992
Length = 814
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 466 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
G ++ + W+ R +++G L YL H +EW + C
Sbjct: 611 GGGMSTTTLAWKDRYKIALGTARGLAYLHHE-CLEWVIHC 649
>06_01_0465 - 3304417-3306834
Length = 805
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 439 EWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
+W R N+++G + L YL H +EW + C
Sbjct: 615 QWSQRYNIALGVAKGLAYLHHE-CLEWIVHC 644
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 466 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN 374
G++I EW +R ++++G E L YL H+
Sbjct: 876 GAAIGAAVVEWEVRLSIAVGVAEGLAYLHHD 906
>06_03_0562 + 22188780-22188910,22189848-22190415
Length = 232
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 439 EWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
EW+ R N+++ + L YL H +EW + C
Sbjct: 71 EWKQRFNIALEVAKGLAYLHHE-CLEWVIHC 100
>06_03_0548 + 22004338-22006746
Length = 802
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 439 EWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
EW R +++G + L YL H +EW + C
Sbjct: 608 EWEQRFKIALGVAKGLAYLHHE-CLEWVIHC 637
>12_01_0496 + 3939731-3939758,3940459-3942773
Length = 780
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 439 EWRIRRNVSIGNKESLTYLQHN*AIEWFLLC 347
+W+ R +++G + L YL H ++W + C
Sbjct: 591 QWQHRYKIAVGVAKGLAYLHHE-CMDWIIHC 620
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 234 ISPKVSAPSRILFLRHHHQDNQF*MAHSFYCE 329
++ KV P RI LR +H+ Q + FY E
Sbjct: 159 VALKVRYPQRITILRGNHESRQITQVYGFYDE 190
>04_04_0484 -
25570798-25570964,25572641-25572679,25572718-25572869,
25572975-25573090,25573196-25573363,25574202-25574300,
25574450-25574650,25575369-25575689
Length = 420
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/46 (23%), Positives = 27/46 (58%)
Frame = -3
Query: 138 RSSIKNIPSKNC*IYTSNIYFLYVIWNLLFYIVVLIYVYN*NQFCI 1
R I +I SK C ++++++++W + + +VL ++Y + F +
Sbjct: 38 RIGITSISSKPC---NDSVWYMWMLWPVAWLSMVLAWIYGSSAFVV 80
>03_06_0366 +
33408671-33408745,33409342-33409398,33410398-33410481,
33410575-33410646,33410768-33410839,33411011-33411051,
33411517-33411583,33411673-33411864,33411947-33412036,
33412111-33412218,33412513-33412578
Length = 307
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 234 ISPKVSAPSRILFLRHHHQDNQF*MAHSFYCE 329
++ KV P RI LR +H+ Q + FY E
Sbjct: 99 VALKVRYPQRITILRGNHESRQITQVYGFYDE 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,899
Number of Sequences: 37544
Number of extensions: 336245
Number of successful extensions: 688
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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