Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120896.seq
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_31357| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)           27   9.7  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/49 (61%), Positives = 39/49 (79%)
 Frame = -2

Query: 277 LRKRILEGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMKEF 131
           L K+ +E A T G+IQLKGHR VGGIR S+YNA+ LEEV+ LV++M +F
Sbjct: 154 LEKKFVEEAATKGMIQLKGHRSVGGIRISLYNAIHLEEVEKLVKFMVKF 202



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = -3

Query: 438 NGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCP-GDDALEKEF 262
           N  +  M + +  K+++IY+ ++ SNGFY+  V K  RS+MNV  RIG P G+  LEK+F
Sbjct: 99  NETVHEMERRSIIKSTMIYDVMDNSNGFYWGQVKKEARSRMNVVLRIGGPDGNQDLEKKF 158

Query: 261 LK 256
           ++
Sbjct: 159 VE 160


>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 217 RDVGGIRASIYNAVTLEEVQALVQYMK 137
           RDV  I+A+I NA +L+EVQ L + +K
Sbjct: 689 RDVAAIKAAIANAKSLDEVQGLERLLK 715


>SB_31357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 197 TNTANVSVSF*LNKSQSLSTFKNSFSKASSPGQPIL 304
           T + ++   + + KS++L TFK+  S + SPG P++
Sbjct: 17  TGSCSLYQQYRIGKSENLWTFKHLISNSCSPGDPLV 52


>SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 185 IY*GTNTANVSVSF*LNKSQSLSTFKNSFSKASSPGQPIL 304
           IY   N   + +S+ ++ S+SL+ FK++ SK  +PG  I+
Sbjct: 146 IYTKLNNELLELSYQMSHSKSLAQFKDAASKLHAPGLNIM 185


>SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)
          Length = 173

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 243 KVSAPSRILFLRHHHQDNQF*MAHSFYCEHF*LQGHNKNHSIAQLCCR 386
           K   P RI  LR +H+  Q    + FY E    Q    N +  + CC+
Sbjct: 98  KAKWPDRITLLRGNHESRQITQVYGFYDE---CQSKYGNANAWRYCCK 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,380,008
Number of Sequences: 59808
Number of extensions: 398115
Number of successful extensions: 897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)