Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120896.seq
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...   114   4e-26
Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      27   8.6  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score =  114 bits (275), Expect = 4e-26
 Identities = 60/129 (46%), Positives = 86/129 (66%), Gaps = 2/129 (1%)
 Frame = -3

Query: 636 YAGAQKNIGTSGVALVIVREDLLN-QALPTMSLFIRLDS*LQTDSILNTPPMFAIYIMGR 460
           + GAQKN+G +G+ +VIVR+DL+  Q   T S+F   +  +  +S+ NTPP   IY    
Sbjct: 194 FGGAQKNLGAAGLTIVIVRKDLIGKQQAITPSVFSYKEM-IANNSLYNTPPTGGIYTTNL 252

Query: 459 VLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCP-GD 283
           VL+WI+  GGL+ + +L  +K+ +IY+ I+ SNGFY+  V K  RS MNV FRIG P G+
Sbjct: 253 VLKWIKSKGGLQAIYELNLQKSGMIYDIIDNSNGFYHCAVDKRYRSIMNVCFRIGGPSGN 312

Query: 282 DALEKEFLK 256
           D LE++FLK
Sbjct: 313 DELEEKFLK 321



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = -2

Query: 277 LRKRILEGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMKEF 131
           L ++ L+G+    +I LKGHR VGGIRAS+YNA+++EE Q L  +M EF
Sbjct: 315 LEEKFLKGSIERNMISLKGHRSVGGIRASLYNAISVEETQVLATWMNEF 363


>Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = -3

Query: 501 LNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRS 322
           ++  PM+  +  G+ +  I  +G    + +   +K ++I   +++ N  YYA +  NV  
Sbjct: 317 IDQSPMWLFFAHGQSVWNISTDGKSFQLQRAGLQKTAMIDIDVKE-NRLYYADIGANVIE 375

Query: 321 KMNV 310
           +MN+
Sbjct: 376 RMNI 379


>Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = -3

Query: 501 LNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRS 322
           ++  PM+  +  G+ +  I  +G    + +   +K ++I   +++ N  YYA +  NV  
Sbjct: 317 IDQSPMWLFFAHGQSVWNISTDGKSFQLQRAGLQKTAMIDIDVKE-NRLYYADIGANVIE 375

Query: 321 KMNV 310
           +MN+
Sbjct: 376 RMNI 379


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 467  WVEYYNGFKGMED*---KECLNWQQRKPHLSTTQLSNRMVFIM 348
            W  ++ G K  +     K  + W++  PH++T  +++RM +IM
Sbjct: 2544 WEGFFWGLKSSDPQTREKFSIVWEKTWPHMATVDIAHRMKYIM 2586


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 467  WVEYYNGFKGMED*---KECLNWQQRKPHLSTTQLSNRMVFIM 348
            W  ++ G K  +     K  + W++  PH++T  +++RM +IM
Sbjct: 2555 WEGFFWGLKSSDPQTREKFSIVWEKTWPHMATVDIAHRMKYIM 2597


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 467  WVEYYNGFKGMED*---KECLNWQQRKPHLSTTQLSNRMVFIM 348
            W  ++ G K  +     K  + W++  PH++T  +++RM +IM
Sbjct: 2555 WEGFFWGLKSSDPQTREKFSIVWEKTWPHMATVDIAHRMKYIM 2597


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 467  WVEYYNGFKGMED*---KECLNWQQRKPHLSTTQLSNRMVFIM 348
            W  ++ G K  +     K  + W++  PH++T  +++RM +IM
Sbjct: 2555 WEGFFWGLKSSDPQTREKFSIVWEKTWPHMATVDIAHRMKYIM 2597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,816,810
Number of Sequences: 27780
Number of extensions: 314170
Number of successful extensions: 756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)