Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120896.seq
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 245 SLSTFKNSFSKASSPGQPILNGTFILLRTFLATGA 349
           +L T + S +K  + G  + NG F+L R  L+  A
Sbjct: 384 NLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNA 418


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 402 KKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 298
           ++ASL     + +  F +  + K  RS + +PF +
Sbjct: 232 RRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHL 266


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 402 KKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 298
           ++ASL     + +  F +  + K  RS + +PF +
Sbjct: 227 RRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHL 261


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 90  SNIYFLYVIWNLLFYIVVLIYV 25
           +NIY++ ++   LFY++V + +
Sbjct: 111 TNIYYIIILAWALFYLLVSLRI 132


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 90  SNIYFLYVIWNLLFYIVVLIYV 25
           +NIY++ ++   LFY++V + +
Sbjct: 164 TNIYYIIILAWALFYLLVSLRI 185


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -2

Query: 526 QLTTNRFNFKHSTYVCHLYNGSSITMDSKEWRIRRNVSIGNKESLTYLQ 380
           QL  +R +   + Y       +  TM   +WR  +   +  K  L YL+
Sbjct: 7   QLLKSRESLLSNAYKQGFCQPTQRTMSKIQWRKPKPAMVEEKTQLRYLE 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,163
Number of Sequences: 438
Number of extensions: 4195
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)