Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120896.seq
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35630.1 68417.m05060 phosphoserine aminotransferase, chlorop...   111   5e-25
At2g17630.1 68415.m02039 phosphoserine aminotransferase, putativ...   108   4e-24
At3g57040.1 68416.m06349 two-component responsive regulator / re...    29   2.0  
At5g58150.1 68418.m07278 leucine-rich repeat transmembrane prote...    29   2.6  
At2g38365.1 68415.m04713 expressed protein                             29   2.6  
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote...    28   4.5  
At5g55830.1 68418.m06957 lectin protein kinase, putative similar...    27   7.9  
At2g41310.1 68415.m05101 two-component responsive regulator / re...    27   7.9  

>At4g35630.1 68417.m05060 phosphoserine aminotransferase,
           chloroplast (PSAT) identical to Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           (SP:Q96255)[Arabidopsis thaliana]; contains TIGRFAM
           TIGR01364: phosphoserine aminotransferase; contains Pfam
           PF00266: aminotransferase, class V
          Length = 430

 Score =  111 bits (266), Expect = 5e-25
 Identities = 56/127 (44%), Positives = 78/127 (61%)
 Frame = -3

Query: 636 YAGAQKNIGTSGVALVIVREDLLNQALPTMSLFIRLDS*LQTDSILNTPPMFAIYIMGRV 457
           Y GAQKN+G SGV +VI+R+DL+  A     + +      +  S+ NTPP F IY+ G V
Sbjct: 260 YGGAQKNVGPSGVTIVIIRKDLIGNAQDITPVMLDYKIHDENSSLYNTPPCFGIYMCGLV 319

Query: 456 LQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDA 277
            + +   GGL+ + +   +KA L+YN IE+SNGF+  PV K+VRS MNVPF +       
Sbjct: 320 FEDLLEQGGLKEVEKKNQRKADLLYNAIEESNGFFRCPVEKSVRSLMNVPFTL---EKSE 376

Query: 276 LEKEFLK 256
           LE EF+K
Sbjct: 377 LEAEFIK 383



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = -2

Query: 277 LRKRILEGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMKEF 131
           L    ++ A    ++QLKGHR VGG+RASIYNA+ L  V+ LV +MK+F
Sbjct: 377 LEAEFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 425


>At2g17630.1 68415.m02039 phosphoserine aminotransferase, putative
           similar to Phosphoserine aminotransferase, chloroplast
           precursor (PSAT) (SP:Q96255) [Arabidopsis thaliana];
           contains TIGRFAM TIGR01364: phosphoserine
           aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 422

 Score =  108 bits (259), Expect = 4e-24
 Identities = 55/127 (43%), Positives = 77/127 (60%)
 Frame = -3

Query: 636 YAGAQKNIGTSGVALVIVREDLLNQALPTMSLFIRLDS*LQTDSILNTPPMFAIYIMGRV 457
           YAGAQKN+G SGV +VI+R+DL+  A     + +      +  S+ NTPP F IY+ G V
Sbjct: 252 YAGAQKNVGPSGVTIVIIRKDLIGNARDITPVMLDYKIHDENSSLYNTPPCFGIYMCGLV 311

Query: 456 LQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDA 277
              +   GGL+ + +   +KA L+YN I++S GF+  PV K+VRS MNVPF +       
Sbjct: 312 FDDLLEQGGLKEVEKKNQRKAELLYNAIDESRGFFRCPVEKSVRSLMNVPFTL---EKSE 368

Query: 276 LEKEFLK 256
           LE EF+K
Sbjct: 369 LEAEFIK 375



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = -2

Query: 277 LRKRILEGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMKEF 131
           L    ++ A    ++QLKGHR VGG+RASIYNA+ L  V+ LV +MK+F
Sbjct: 369 LEAEFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 417


>At3g57040.1 68416.m06349 two-component responsive regulator /
           response reactor 4 (RR4) identical to responce reactor4
           GI:3273202 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00072 response regulator receiver domain
          Length = 234

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -3

Query: 375 IEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDALEKEFLKVLRLWDL 235
           +++S+ F   PV   + S  NVP RI    ++  E+ FLK +RL DL
Sbjct: 95  VKESSAFRDIPVV--IMSSENVPARISRCLEEGAEEFFLKPVRLADL 139


>At5g58150.1 68418.m07278 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 785

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 448 DSKEWRIRRNVSIGNKESLTYLQH 377
           DS  WR+R  +++G   +L +L H
Sbjct: 612 DSAPWRLRHKIALGTARALAFLHH 635


>At2g38365.1 68415.m04713 expressed protein
          Length = 120

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 423 GMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNV 310
           G+SQL TKK ++I+NT E +N     P  + +  ++ +
Sbjct: 70  GISQLVTKKWTIIFNT-ENTNNHVSLPAPQEISPRLRL 106


>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
           kinase, putative contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 966

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 439 EWRIRRNVSIGNKESLTYLQHN 374
           EWR R  +++G  + L YL H+
Sbjct: 758 EWRTRHQIAVGVAQGLAYLHHD 779


>At5g55830.1 68418.m06957 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 681

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 475 LYNGSSITMDSKEWRIRRNVSIGNKESLTYLQH 377
           LY  S     + +W  R N++IG   +L+YL H
Sbjct: 451 LYQESQTGAVALDWSHRLNIAIGLASALSYLHH 483


>At2g41310.1 68415.m05101 two-component responsive regulator /
           response reactor 3 (RR3) identical to response reactor 3
           GI:3273200 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00072 response regulator receiver domain
          Length = 225

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 375 IEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDALEKEFLKVLRLWDL 235
           +++S  F   PV   + S  NVP RI    ++  E+ FLK ++L DL
Sbjct: 93  VKESAAFRSIPVV--IMSSENVPARISRCLEEGAEEFFLKPVKLADL 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,879
Number of Sequences: 28952
Number of extensions: 287850
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)