Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120895.seq
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 28 1.3
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 1.8
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 1.8
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 3.1
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.1
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 4.0
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 5.3
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 26 5.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.1
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 7.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 7.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 7.1
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 9.3
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 9.3
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 467 QALRILVFRLWNHKRAKSNFGQFFSIQYGDIHKH 568
Q L IL+ +LWNHK KS+ IQ + H
Sbjct: 219 QRLAILIRKLWNHKAFKSHVSPQELIQEVTVLSH 252
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 460 TLGPMVYVVLPLAGSNTTIFLSGSGY 383
T+ V VVLP AG+NT +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 460 TLGPMVYVVLPLAGSNTTIFLSGSGY 383
T+ V VVLP AG+NT +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 37 ATKRKIGDSSSDDNQPKRERVES 105
A+KRKI SSSDD++ K E S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 415 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 326
NT ++ +G G ++ +H +LFK R F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 445 VYVVLPLAGSNTTIFLSGSGYNLSS 371
V VV+P AG TT SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 445 VYVVLPLAGSNTTIFLSGSGYNLSS 371
V VV+P AG+ TT SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 41 LNARLAIRAATTTSQSGKEWK 103
LNA L +RA S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 640 RLVPFSKEKSLCKVSLQNVAKYIVVFVNVSVLNAKKLAKVA 518
R + FSK LC +L ++ +F+N SV+ A ++ + A
Sbjct: 453 RTMSFSKMCPLCCTTLSKFVRHFFMFLNDSVILATEVNEKA 493
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 338 TKFVFQ-KSAFETTTIQY*KVASFHINRHCSCHNI 237
T +VFQ K + T + Y KVA +R+ SC+ I
Sbjct: 261 TNWVFQRKGVLQATNMTYGKVAEPLESRNASCYRI 295
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 382 NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 281
N + C+ + +NSFFKNL S +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 641 TFGSIFKGKIALQSVFAKCCQIYCCVCECL 552
TFG++FK + A+ F QI+CCV CL
Sbjct: 188 TFGTLFK-EHAVAPFFV--FQIFCCVLWCL 214
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 167 CFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 12
C +L P+L + + +SP + +L+S + I R+ A L C C
Sbjct: 538 CPSLAVPPILTILASLQHTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDC 589
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 130 YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 219
++NN+ N+KH E G + Y TP +LE
Sbjct: 61 FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 313 PSKQLQFSIEKLPRFTLIAIAPATTSLSTRVAPIE 209
P ++ Q+ E++P + +IA AP TT + VAP E
Sbjct: 1277 PRREPQYG-ERVP-YLIIAAAPGTTLANRSVAPEE 1309
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -1
Query: 487 NQNPQGLPCTLGPMVYVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLASRQNS--FFK 320
N + G P +L + PLA S T+ L S S NL LF+ + +N+ +F
Sbjct: 203 NNSSSGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262
Query: 319 NLPS 308
P+
Sbjct: 263 RRPT 266
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +1
Query: 136 NNNGAAFNVKHDETGVMCYFTPSSVQLEPRELTKMLWQEQWRLM*NEATFQY 291
+N G+A K + G++ F + + + ++K W + W ++ N + ++Y
Sbjct: 517 SNGGSASPDKIFKEGLLLVFGATELGTDLAMVSKAAWHKHWIVVENGSLWEY 568
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.3
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = -1
Query: 634 VPFSKEKSLCKVSLQNVAKYIVVF--VNVSVLNAKKLAKVAFGTFM--VPKS-ENQNPQG 470
V FS EK + +L ++ Y+ + +SV + K A +A + + VP S N+ P
Sbjct: 229 VRFSSEKEQ-QHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQ 287
Query: 469 LPCTLGPMVYVVLPLAGSNTTIFLSGSGYNLS 374
C++ P+ NTT+F+ G NLS
Sbjct: 288 DLCSMDPL----------NTTVFVGGLASNLS 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,898
Number of Sequences: 5004
Number of extensions: 61757
Number of successful extensions: 199
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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