Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120895.seq
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   4.2  
01_07_0379 + 43177978-43178572,43178643-43178674                       29   4.2  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   5.5  
11_01_0475 - 3669734-3671452                                           27   9.7  
11_01_0271 + 2039100-2041760                                           27   9.7  
07_03_1625 - 28219006-28219041,28219150-28219227,28219318-282193...    27   9.7  
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801...    27   9.7  

>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 312 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP 473
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKP 400


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 167 CFTLKAAPLLLLYG-TSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 12
           C+    AP +L YG  SC +  L  L R     ++L   +L L+ +  +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 261 INVKRGNFSILNCSCFEGRFLKNEFC 338
           + + +      +CSC+ G ++KN FC
Sbjct: 72  MGICKNTIGSFDCSCYPGSYMKNGFC 97


>11_01_0475 - 3669734-3671452
          Length = 572

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 143 LLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
           LL  Y   C  +     S  G   SL ++ +L  +     CAVCC C
Sbjct: 519 LLRAYSMLCHDNGRRFKSLLGLPMSLRKTWLLMEIQTCEDCAVCCGC 565


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = -1

Query: 595 LQNVAKYIVVFVNVSVLNAKKLAKVAFGTFMVPKSENQNPQGLPCTLGPMVYVVLPLAGS 416
           ++   KY+++F  ++   A +      G F +   +NQ+  G P   G   Y  +     
Sbjct: 180 VERARKYLLIFATLAATVAYQAGLSTPGGFWLGSLDNQHLAGDPMLRGNHPYRFMVFFYF 239

Query: 415 NTTIFLS 395
           NTT F++
Sbjct: 240 NTTAFVA 246


>07_03_1625 -
           28219006-28219041,28219150-28219227,28219318-28219389,
           28219468-28219567,28219632-28219708,28219802-28219872,
           28219987-28220066,28220143-28220194,28220376-28220431,
           28220506-28220551,28220631-28220682,28220787-28220888,
           28220967-28221021,28221101-28221180,28221271-28221321,
           28221354-28221377,28221742-28221833,28221928-28222057,
           28222156-28222230,28222433-28222543,28222637-28222693
          Length = 498

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = -3

Query: 518 FWHVYGSKVGKPKSAGLALHSWTDGVRSL--AVGRLQHHDIFI 396
           FWH +    G P  A      W DG  SL  A  R++ H  F+
Sbjct: 90  FWHTFRGTGGDPFGAPTKSWPWEDGTNSLDMAKRRMRAHFEFM 132


>04_04_1639 +
           34978498-34978585,34979049-34979343,34980070-34980107,
           34980655-34980788,34980868-34980973,34981451-34981536,
           34981962-34982150,34982477-34982641,34982898-34982921,
           34983235-34983348,34983605-34983850
          Length = 494

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 267 VKRGNFSILNCSCFEGRFLKNEFCRLANLNS--LHEWEDKLYPEPDKNIVVLEP 422
           ++  NF++L  SC EG+F   E   L  L S  LH +E +  P     +  L P
Sbjct: 254 IRDRNFNMLTDSCLEGQFSNEEGTELVRLASRCLH-YEPRERPNVRSLVQALAP 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,473,308
Number of Sequences: 37544
Number of extensions: 404826
Number of successful extensions: 1388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)