Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120895.seq
(646 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12) 31 0.61
SB_17241| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 29 3.2
SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 29 4.3
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 28 5.7
SB_53279| Best HMM Match : rve (HMM E-Value=5.2e-36) 28 5.7
SB_50699| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_49675| Best HMM Match : rve (HMM E-Value=5.2e-36) 28 5.7
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 28 5.7
SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36) 28 5.7
SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32) 28 5.7
SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32) 28 5.7
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11) 28 5.7
SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21) 28 5.7
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36) 28 5.7
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0) 28 7.5
SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07) 28 7.5
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
Length = 469
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 357 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWF---SDFGTINVPKATL 527
S +ED+LY + N + L+PA+ + + I R Q + C WF + F + + L
Sbjct: 10 SYQAYEDELYGQTSPNSLSLQPAS-RLSAKILHRFQNRSCASWFRMSAAFPCLPISAGIL 68
Query: 528 ASFLAFN 548
A L F+
Sbjct: 69 ACHLFFS 75
>SB_17241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 195 YAVVRSIGATRVDKDVVAGAMAINVKRGNFSILNCSCFEG 314
Y + RSI ++ DKDV+A ++ KR F +L C +G
Sbjct: 97 YELARSIISSSYDKDVIALERMLDGKRDGFYVLCCQISKG 136
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -3
Query: 275 SFHINRHCSCHNIFVNSRGSN*TDDGVK*HITPVSSCFTLKAAPLLLLYGTSCWSSPLS 99
S HI RHC C +++ S ++ G++ +I S +T + + LY S ++S LS
Sbjct: 1687 SVHIRRHCQC--VYIVSAYTSSLSVGIRLYIV---SAYTSSLSVRIRLYIVSAYTSSLS 1740
>SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 67 SDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGV 183
SDDN+ +R + G D +N NG +NVK+ + GV
Sbjct: 109 SDDNKGDIDRGDGGNDDSSGGNDNRNG-GYNVKNYDNGV 146
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 1 RHEQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFN 159
R++ S + +K GD+ D + P E+ ES EDQ+ +N AA N
Sbjct: 811 RNKDARKETRSDKSGKKGGDAGDDPSDPDEEKDESEEDQERKRHNKK--AALN 861
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 777 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 831
>SB_53279| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 337
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 61 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 115
>SB_50699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 375 DKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTINVPKATLASFL 539
D L DK+IV P T+ P K C F +N+P TLA +L
Sbjct: 38 DILNYSADKSIVTFMP---NRTFIFDPETSCKGCNDTTDTFTNVNIPLLTLALWL 89
>SB_49675| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 412
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 46 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 100
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 824 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 878
>SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 493 SENQNPQGLPCTLGPMVYVVLPLAG 419
S + NPQ +P T P + VV+P AG
Sbjct: 47 SVSPNPQAMPMTSRPQLKVVIPSAG 71
>SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 748
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 379 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 433
>SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 546
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 206 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 260
>SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 517
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 206 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 260
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 925 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 979
>SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11)
Length = 512
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 334 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 388
>SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)
Length = 1032
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 440 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 494
>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1677
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 808 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LEEIKSMTSKCPVCCEC 862
>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 759
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 46 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVK 165
R +G + S DN+ R+E+ ++L P N + +VK
Sbjct: 127 RNLGSTGSSDNRTHYRRIETKAPRRLEPLKPNTASRTSVK 166
>SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07)
Length = 409
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 173 SSCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVCCSC 3
++C TL PL L+ + C ++ L+ F +L S + + +M C VCC C
Sbjct: 235 ATCATLSEDPLYQLHESLCHPG-VTRLNHFVRTKNLPYS-LGEIKSMTSKCPVCCEC 289
>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 16 TAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGA 150
T+ GS IGD DD Q R R G YNNN G+
Sbjct: 18 TSGDGSRTFNSNIGDGMEDDRQSNRGRGRGG-------YNNNQGS 55
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 13 QTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQ 120
+ H T+R+ G S N PKRER D +
Sbjct: 124 RVGHFARDCTRRRYGGGRSFSNSPKRERQSPDRDDR 159
>SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 7 EQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED-QQLVPYNNNNGAAFNV 162
EQ+T S T G SSS P E VES ED +Q +P NN ++
Sbjct: 84 EQETRETPSSETLSNSG-SSSKSTLPPTE-VESSEDFEQSIPRNNEKSGTGDI 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,313,406
Number of Sequences: 59808
Number of extensions: 464979
Number of successful extensions: 1468
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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