Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120895.seq
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    31   0.53 
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    31   0.92 
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    31   0.92 
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    31   0.92 
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL032646-9|CAA21684.1|  305|Caenorhabditis elegans Hypothetical ...    27   8.6  

>L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical
           protein K02D10.1a protein.
          Length = 526

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 366 EWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTINVPKATLASFLAF 545
           EW + L  +P K + VL   + KT      +++    GF       +  P   LA +L  
Sbjct: 38  EWINLLLEDPSKKVFVLTNNSTKTLEQYMKKIE--KLGFGHLGRNNVISPAIVLADYLKS 95

Query: 546 NTETFTNTTIYL--ATFCKDTLQSD 614
           N + F+   +YL      K TL++D
Sbjct: 96  NADKFSGEYVYLIGTENLKATLEND 120


>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 43  KRKIGDSSSDDNQPKRERVESGEDQQ 120
           K K GDSSSDD+ P+R+R E   D +
Sbjct: 13  KFKRGDSSSDDSGPERDRDEDDSDNE 38


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 391 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLIAIAPATTSL 233
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L + +  TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL-STSQVTTSL 564


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 391 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLIAIAPATTSL 233
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L + +  TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL-STSQVTTSL 564


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 391 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLIAIAPATTSL 233
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L + +  TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL-STSQVTTSL 564


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 447 IGPRVQGKPCGFWFSDFGTINVPKATLASFLAFNTETFTNTTIYLATF 590
           +GPR QG   G  F+ FG++    A L +   FN+  +T  ++ + TF
Sbjct: 403 LGPRQQGTMQGV-FAFFGSVGRCAAPLVTTFFFNSSGYTWVSVEMLTF 449


>AL032646-9|CAA21684.1|  305|Caenorhabditis elegans Hypothetical
           protein Y54E2A.10 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 395 GLGIQLVF-PFVQTIQISQSTKFVFQKSAFETTTIQY*KVASFHINRHCSCHNIFV 231
           G+ I +V  PFV    I +     +  S+  T+TI Y ++ S     HC    IFV
Sbjct: 95  GIRIAVVLLPFVSWNSIRECDP-TYTSSSISTSTILYAQLLSLRWQEHCDADVIFV 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,841,070
Number of Sequences: 27780
Number of extensions: 355803
Number of successful extensions: 1218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)