Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120894.seq
(560 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 95 1e-18
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 46 6e-04
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 45 0.001
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 44 0.002
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 44 0.002
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 40 0.040
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 38 0.12
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 36 0.49
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 36 0.65
UniRef50_Q16G86 Cluster: Putative uncharacterized protein; n=1; ... 33 4.6
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 33 6.0
UniRef50_A6PS51 Cluster: Putative uncharacterized protein precur... 33 6.0
UniRef50_Q4FML9 Cluster: Putative uncharacterized protein; n=2; ... 32 8.0
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 32 8.0
UniRef50_Q9NRN7 Cluster: L-aminoadipate-semialdehyde dehydrogena... 32 8.0
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 94.7 bits (225), Expect = 1e-18
Identities = 44/45 (97%), Positives = 45/45 (100%)
Frame = +1
Query: 334 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 468
FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL+
Sbjct: 3 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 81.0 bits (191), Expect = 2e-14
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 140 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLY 253
MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLY
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLY 38
Score = 81.0 bits (191), Expect = 2e-14
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = +1
Query: 1 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM*NLNPL 129
ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL+ LN L
Sbjct: 11 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQL 53
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 46.0 bits (104), Expect = 6e-04
Identities = 18/45 (40%), Positives = 33/45 (73%)
Frame = +1
Query: 334 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 468
F +D L++T HRD+I+APL+++++S + L+L+PY V +L+
Sbjct: 3 FQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 43.6 bits (98), Expect = 0.003
Identities = 17/41 (41%), Positives = 31/41 (75%)
Frame = +1
Query: 1 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM*NLN 123
++T HRD+I+APL+++++S + L+L+PY V +L+ LN
Sbjct: 11 SSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELVPQLN 51
Score = 41.1 bits (92), Expect = 0.017
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +2
Query: 140 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLY 253
MAF +D L++T HRD+I+APL+++++S + L+L+
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELF 38
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 44.8 bits (101), Expect = 0.001
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 343 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 453
LV+ L T+HRD + +PLVE A R LQLYPY +
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 41.1 bits (92), Expect = 0.017
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 7 TIHRDAITAPLVETAISNFRHKLQLYPYQV 96
T+HRD + +PLVE A R LQLYPY +
Sbjct: 144 TVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 40.3 bits (90), Expect = 0.030
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +2
Query: 35 PSWKPPSAISVTSFNFTHI----R*IPSSC--KILIPYSSSMAFTNLVDTLANTIHRDAI 196
P ++PPS +S F PS + P S LV+ L T+HRD +
Sbjct: 91 PPYQPPSDLSPVEITFVPAPQPGNPPPSGITRRFYRPALSGGGLKELVEILNPTVHRDTV 150
Query: 197 TAPLVETAISNFRHKLQLY 253
+PLVE A R LQLY
Sbjct: 151 CSPLVEAAAGPLRDSLQLY 169
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 44.0 bits (99), Expect = 0.002
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 334 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 462
F + + L++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 3 FQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 40.3 bits (90), Expect = 0.030
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1
Query: 1 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 105
++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 11 SSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 39.9 bits (89), Expect = 0.040
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 140 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLY 253
MAF + + L++T+HRD + APL+E+ R L+LY
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELY 38
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 44.0 bits (99), Expect = 0.002
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +1
Query: 340 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 453
++++TL++TIHRD I APL+ET S +R L+ +P+ V
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
Score = 39.5 bits (88), Expect = 0.053
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +2
Query: 152 NLVDTLANTIHRDAITAPLVETAISNFRHKLQ 247
++++TL++TIHRD I APL+ET S +R L+
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLR 57
Score = 37.5 bits (83), Expect = 0.21
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 1 ANTIHRDAITAPLVETAISNFRHKLQLYPYQV 96
++TIHRD I APL+ET S +R L+ +P+ V
Sbjct: 32 SSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 39.9 bits (89), Expect = 0.040
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 346 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 453
V++L T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSI 49
Score = 36.3 bits (80), Expect = 0.49
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 7 TIHRDAITAPLVETAISNFRHKLQLYPYQV 96
T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 20 TTHRDTITAPIVESLATPLRRSLERYPWSI 49
Score = 35.1 bits (77), Expect = 1.1
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 158 VDTLANTIHRDAITAPLVETAISNFRHKLQLY 253
V++L T HRD ITAP+VE+ + R L+ Y
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERY 45
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 38.3 bits (85), Expect = 0.12
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 334 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 468
F +D LA T HRD P++E+ + + R +Q YP+ + +L+
Sbjct: 3 FQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELL 47
Score = 35.1 bits (77), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 140 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLY 253
MAF +D LA T HRD P++E+ + + R +Q Y
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTY 38
Score = 34.7 bits (76), Expect = 1.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 1 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM*NLN 123
A T HRD P++E+ + + R +Q YP+ + +L+ LN
Sbjct: 11 APTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLN 51
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 36.3 bits (80), Expect = 0.49
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 352 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 465
+LA T HRD I PL+E +R L YP+ + + L
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
Score = 34.3 bits (75), Expect = 2.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 1 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 108
A T HRD I PL+E +R L YP+ + + L
Sbjct: 99 APTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 35.9 bits (79), Expect = 0.65
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 140 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLY 253
MAF + ++ L +T HRDA T P++ + + R L LY
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLY 38
Score = 35.9 bits (79), Expect = 0.65
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 334 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 447
F + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 3 FQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
>UniRef50_Q16G86 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 583
Score = 33.1 bits (72), Expect = 4.6
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 393 PSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGLLA*HGFHQFSRHSRQHHP 560
P +R Q P + I G+F A D+ N + + GLL +G + H + HHP
Sbjct: 81 PKSHRDVQGPGSNA---IVGEFNAADLRNSLDRKLNGLLYSNGINTGGHHHQTHHP 133
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 32.7 bits (71), Expect = 6.0
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 140 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLY 253
MAF + ++ L +T HRDA++ P++ + + + L+ Y
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETY 38
Score = 32.7 bits (71), Expect = 6.0
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 334 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 447
F + ++ L +T HRDA++ P++ + + + L+ YP+
Sbjct: 3 FQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
>UniRef50_A6PS51 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 581
Score = 32.7 bits (71), Expect = 6.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 409 WRFPLGEPLWRLGGWC 362
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
Score = 32.7 bits (71), Expect = 6.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 221 WRFPLGEPLWRLGGWC 174
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
>UniRef50_Q4FML9 Cluster: Putative uncharacterized protein; n=2;
Candidatus Pelagibacter ubique|Rep: Putative
uncharacterized protein - Pelagibacter ubique
Length = 196
Score = 32.3 bits (70), Expect = 8.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 174 LARVSTKLVKAMLEE*GIKILHELGIYLIWVKLKLVTEIADGGFHEGSRYGV 19
L++ K +K L++ G+K + E+ I +WV +L E +HEG GV
Sbjct: 62 LSKELLKNIKVYLDKSGVKKIKEIKIINLWVVRQLKNEYNPIHYHEGQLSGV 113
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 32.3 bits (70), Expect = 8.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 334 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 465
F +D LA+T H+D P++E+ + LQ YP+ V L
Sbjct: 3 FQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDL 46
>UniRef50_Q9NRN7 Cluster: L-aminoadipate-semialdehyde
dehydrogenase-phosphopantetheinyl transferase; n=24;
Euteleostomi|Rep: L-aminoadipate-semialdehyde
dehydrogenase-phosphopantetheinyl transferase - Homo
sapiens (Human)
Length = 309
Score = 32.3 bits (70), Expect = 8.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 393 PSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP 500
P G+RHQ PSQ + P +F + N+ S VP
Sbjct: 248 PDGSRHQDVPSQDDSKPTQRQFTILNFNDLMSSAVP 283
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,449,908
Number of Sequences: 1657284
Number of extensions: 10466066
Number of successful extensions: 25213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25210
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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