Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120894.seq
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   4.1  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   4.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   7.2  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    21   9.6  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 196 NGSPSGNRHQQFPSQASTLP 255
           + SPSG+  Q   S AST P
Sbjct: 37  SSSPSGSSPQHSSSSASTSP 56



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 384 NGSPSGNRHQQFPSQASTLP 443
           + SPSG+  Q   S AST P
Sbjct: 37  SSSPSGSSPQHSSSSASTSP 56



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 12  PPRRHNGSPRGNRHQQFPSQASTLP 86
           P    + SP G+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 196 NGSPSGNRHQQFPSQASTLP 255
           + SPSG+  Q   S AST P
Sbjct: 37  SSSPSGSSPQHSSSSASTSP 56



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 384 NGSPSGNRHQQFPSQASTLP 443
           + SPSG+  Q   S AST P
Sbjct: 37  SSSPSGSSPQHSSSSASTSP 56



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 12  PPRRHNGSPRGNRHQQFPSQASTLP 86
           P    + SP G+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -2

Query: 70  CDGNC*WRFPRGEPLWRLGGW 8
           C G   W  P+ E  +   GW
Sbjct: 211 CSGTIDWALPKQEDCFYQEGW 231


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 2   PTPSTETP*RLPSWKP 49
           P PS E P    +WKP
Sbjct: 477 PNPSEENPLINVTWKP 492


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,491
Number of Sequences: 336
Number of extensions: 2685
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)