Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120894.seq
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    28   0.82 
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   1.4  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   5.8  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.6  

>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +2

Query: 32  LPSWKPP---SAISVTSFNFTHIR*IPSSCKILI 124
           LPS+KPP   S I++ +FN T    IPSS  ILI
Sbjct: 447 LPSYKPPSNGSNIAINAFNETVGDRIPSSKDILI 480


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 8   PSTETP*RLPSWKPPSAISVTSFNFTHIR*IPSSCKILIP-------YSSSMAFTNLVDT 166
           PST +   + +   PS +S ++ NF     IP S   L+P       Y+ +     L   
Sbjct: 335 PSTTSIPSINNQPFPSGLSASNSNFASSSFIPQSVPQLLPIYYQTIFYNGNYYLQQLPSA 394

Query: 167 LANTIHRDAITAPLVETAI 223
              T+ RD   APLV  +I
Sbjct: 395 SPPTMFRDHSFAPLVSPSI 413


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 347 TKLVKAMLSAEARDKLTLLVVY 282
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 65  VTSFNFTHIR*IPSSCKILIPYSSSMAFTNLV 160
           +TSF+F H++ I  S     PY  ++ F  LV
Sbjct: 67  MTSFDFDHVQQILLSAVQPYPYDKNLMFVYLV 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,546
Number of Sequences: 5004
Number of extensions: 40569
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)