Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120894.seq
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -3

Query: 222 MAVSTRGAVMASRWMVLARVSTKLVKAMLEE*GIKILHELGIYLIWVKLKLVTEIADGG 46
           +++ST     AS ++  A++S   +K   E      +  L  + +W+ L    EIA+ G
Sbjct: 737 VSISTVALTAASSFVYFAKLSMNEMKGCEESCSFYFIFALFTFFVWMDLSFFGEIAEHG 795


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 35  PSWKPPSAISVTSFNFT 85
           P W+PP A+ V +F+FT
Sbjct: 52  PDWQPPFAVDVENFHFT 68


>SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +1

Query: 334 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT*TTNKVSLSLGFSL 513
           FTN +D+L NT+  D +T     T + +  + L L      + L +  T   + +L  SL
Sbjct: 40  FTNTLDSLINTL--DLLTELFTNT-LDSLINTLDLLTELFTNTLDS-LTELFTNTLD-SL 94

Query: 514 SMAFTNLVDTLANTI 558
           +  FTN +D+L NT+
Sbjct: 95  TELFTNTLDSLINTL 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,547
Number of Sequences: 59808
Number of extensions: 307074
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)