Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120894.seq
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   4.0  

>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 3   QHHPPRRHNGSPRGNRHQQFPSQASTLPISGKFQAHVKS 119
           + HPP+ H GSP      Q P      P  G+F  ++++
Sbjct: 531 EQHPPQSH-GSPHPGPQYQGPPPRKEFPTPGRFVTNIRA 568


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 32   LPSWKPPSAISVTSFNFTHIR*IPSSCKILIPYSSSMAFTNLVDTLANTIHRDAITAPLV 211
            L S+   S I+ T+ NFT    I S      P S+S   + +    +++ H  A+T+   
Sbjct: 832  LESYHFQSTITATTINFTGTSEISSELTPTSPGSASKTTSGMAKRASSSKHPSAVTSSAR 891

Query: 212  ETAISN 229
             +A+++
Sbjct: 892  SSAVTS 897


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,252,288
Number of Sequences: 27780
Number of extensions: 236218
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)