Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120894.seq
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 507 EAQGQADFVGCLCHELGIYLIWVK 436
           +A G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
 Frame = +3

Query: 387 GSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP----GLLA*HGFHQFSRHSRQH 554
           G P G    Q PSQ    P SG  Q   +  QQ  L P      +  H  +   +  +QH
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQL-LQQHILSPTQLQSFMQQHSLY-LQQQQQQH 106

Query: 555 H 557
           H
Sbjct: 107 H 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,412
Number of Sequences: 438
Number of extensions: 2731
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)