Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120894.seq
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    30   1.2  
At1g67035.1 68414.m07623 expressed protein ; expression supporte...    29   2.8  
At5g39540.1 68418.m04789 hypothetical protein predicted proteins...    27   8.6  
At3g56790.1 68416.m06316 RNA splicing factor-related contains we...    27   8.6  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    27   8.6  

>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 183 WMVLARVSTKLVKAMLEE*GIKILHELGIYLIWVKLKLVTEIADGGFHEGSRY 25
           W  L  V   +V ++  E  +K L    IYL W+    +    DGG H  +R+
Sbjct: 263 WRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCFEDGGHHRPNRH 315


>At1g67035.1 68414.m07623 expressed protein ; expression supported
          by MPSS
          Length = 229

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 81 KLKLVTEIADGGFHEGSRYG 22
          KLKL+ +  D GF  GSRYG
Sbjct: 26 KLKLLVDNGDYGFERGSRYG 45


>At5g39540.1 68418.m04789 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 196

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 459 QAHDINNQQSQLVPGLLA*HGFHQFSRHSRQHH 557
           Q HD+  QQ Q  PG L  +  H     S+Q H
Sbjct: 160 QRHDLEYQQQQFCPGPLDSYQPHPHDMESQQPH 192


>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
           similarity to U4/U6-associated RNA splicing factor [Homo
           sapiens] gi|2853287|gb|AAC09069
          Length = 206

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 3   QHHPPRRHNGSPRGNRHQQFPSQASTLPISGKFQ 104
           +HH  R H GS R +R ++    A T   S +F+
Sbjct: 23  KHHHERSHEGSKRKDRSEEENGAARTTNKSSRFE 56


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 346 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT 471
           + ++ N I +DA  A L +  + N    L+L PY   +K M+
Sbjct: 304 IQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMS 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,938,620
Number of Sequences: 28952
Number of extensions: 233348
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)