Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120893.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    27   1.8  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   3.1  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    27   3.1  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   5.4  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   7.1  

>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 252 KADETRVETVPQHRRGLLHGFRAHQARARDVLAPLLAKLIRSV 124
           KA E R+E V +  R L  G   + +   DVLAPL +   +++
Sbjct: 198 KAYERRLEEVEKQLRSLDEGMEDYLSLETDVLAPLCSDSSKAI 240


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 591 IFSSNIVLRSANYSGLPLF 647
           +F++N+++RSA   G PLF
Sbjct: 514 VFAANVIMRSAVAGGFPLF 532


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 393 VQQRRGRIEMALDGSGIKLYCRLGVLEQAQRRLS 494
           +Q   G I+  LD   +   CR+G+L + QRRLS
Sbjct: 1   MQTYTGIIKTPLDAIILFEACRIGLLPRVQRRLS 34


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 542 ELQNWFYEHVLPQCTARQSALSLLQDA 462
           E+QNW++EH    C     A +  Q+A
Sbjct: 190 EIQNWYFEHHTELCLLIHHAEARAQEA 216


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 142 CEQWGKHVSSARLMCSKSVQ*TSPMLRYGLNSCFISFS 255
           CE +G +V  A +   K VQ     L+YGL + F+S +
Sbjct: 155 CEIFGLYV--AFIYLEKGVQVLCDQLKYGLTNTFLSIT 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,256
Number of Sequences: 5004
Number of extensions: 39858
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)